Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0065 ATGTCGCAGGGGTTTCATTCTCTCACTACTACTCCATTCCGCGATTTCTTGAGTTCTGAAGAGAATAAGCCTGATTTTAAAGAACTCGATCTGGCCTCGCCGTTGAAACCTCGCGCCGCAATTAACGCCGGCGCCGGAGGCGCTTACACTCCGAGCTCCAGCTCCAGTTCCTCCTCCGGCTCACTTTCCGGCACCAGAAACACCATCGCCAAATTGCCCAAAAAACCAGACGCTAAGCCGCACAACCACTCCGGCGAGCTCTCCGAGAGCCTCCGATCCACTTCGGTGACGCGAGCCTCGAAGCCAGGTCATCGGAGATCCGTTTCCGCTGGAGCTCCGTTGATATACTCCGGTGGGAGCTTTAGTTGCGCAAATGGAGCAACTTCGGGGTCCAACTTCAATGGCAATTTGTTCGCAGCCGGCAACATTTGCCCGACCGGGAAGATCCTTAAACCCGGTTCAGTGTCTCGACCGCCGTCCAATAGAACCGATGTTTTGGGTTCAGGGACGGTGAACTATGGCCTTGGGAACATAATGCGCGGTGGCACAAAATTAGGGAATGGCGGGCACGTCATCGCTGACGACAATGTAGCCGGAAATTCTCAGGGCGGAGGGGTTTCTGCTATTGTGAAGAGGGCAATGAGTGGTTCCGATCCAGAGGAGGTGAAGAATGCAGGAAATGAACTGTACAGAAGCCGTCACTTTGTGGAGGCATTGTCCTTGTATGATCGCGCTATTTCCATATCGCCCAATAATCCGGCTTACCGGAGTAATCGCGCGGCGGCGTTGGCGGCGCTGGGGAGGCTGGCTGCGGCGGCTAAGGAATGTGAGGAGGCTGTGAAATTGGACCCTAATTATGCAAGGGCTCACCAGAGGCTCGCTTCTCTTTACCTTCGCTTTGGGCAGGTTGAAAATGCCCAGAGCCACCTGTGTTTCCCTGGAAAACAGGTGGATCAATCTGAACTGCACAAGCTGAGGCTATTGGAGAAGCATCTGAAACGATGTGCTGAGGCACGAAAAATTGGTGATTGGAAGAGTGCGGTTAGGGAAGCAGACGCAGCCATTGCTGTTGGAGCAGATTTCTCACCTCAGCTTCTTGCTTCCAAAGCCGAAGCCTATTTGAAGCTTCATCTACTTGAGGACGCCGAGTCCACCCTCTCGAACATTCCAAAGCTGGATGGCTGCTCTCAGACCAAGTTCTTTGGTATGGTTGGTGAGGCTTATGTACCCTTTGTTCGAGCTCAGGTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTAGCAGAAGCAGAAAAGGCTAATTTGATAGATTACAGTAATGTGGAAGTTGCAAGAGTTGTAAGTAGTGTGAAAATGGTGGCTAGGGCTCGTTCTCGAGGCAACGACCTTTTCAGCTCTGGAAAATACTCTGAAGCTTGCTCTGCTTATGGAGAGGGCCTCAGATATGACAGTTCCAACTATGTTCTATACTGCAATAGAGCTGTTTGTTGGTCTAAACTTGGACTGTGGGAGAAATCTGTTGAGGATTGCAACCAAGCCCTCTCCATTCAACCAAATTGCACCAAAGCCCTTTTCCGTAGGGCTGCCTCAAATGCAAAGCTTGAAAGGTGGGCAGACTCTGTGAAAGATTACGAGGCGTTAAAGCACGAACTTCCCAGAGACAGTGAAGTCGTAGAGTCTCTCTGTCAGGCTCAACTTGCATTGAAGAAATCTCGTGGGGAAGTGTTTGGTACAAAGCTTGGTGTTGAGGTTGAAGAGGTCTCTACATTAGATAGATTCAAAGCTACAATTGCTTCTCCTGGTGTTTTAGTTGTTCATTTCAAAGAGGCGTCAAACGAACTATGTGAAGAAATATCCCCATTTGTAAATACGCTCTGCGTTAGATACCCAACTGTTAAATTTATTAAGGTGGAAGTGGAAGAGTGTACAAGTATAGCAAAAGCTGAGAGCATAAGAACTGTAccaactttcaaaatatatgcaAATGGAGAGAAGGTGAAGGAGATGATCCGGCCAAGCCATCAGATATTGGAAGACTCAGTGATGAACTGTAGTAACATGTAG 2064 0.4893 MSQGFHSLTTTPFRDFLSSEENKPDFKELDLASPLKPRAAINAGAGGAYTPSSSSSSSSGSLSGTRNTIAKLPKKPDAKPHNHSGELSESLRSTSVTRASKPGHRRSVSAGAPLIYSGGSFSCANGATSGSNFNGNLFAAGNICPTGKILKPGSVSRPPSNRTDVLGSGTVNYGLGNIMRGGTKLGNGGHVIADDNVAGNSQGGGVSAIVKRAMSGSDPEEVKNAGNELYRSRHFVEALSLYDRAISISPNNPAYRSNRAAALAALGRLAAAAKECEEAVKLDPNYARAHQRLASLYLRFGQVENAQSHLCFPGKQVDQSELHKLRLLEKHLKRCAEARKIGDWKSAVREADAAIAVGADFSPQLLASKAEAYLKLHLLEDAESTLSNIPKLDGCSQTKFFGMVGEAYVPFVRAQVEMALGRFENAVAEAEKANLIDYSNVEVARVVSSVKMVARARSRGNDLFSSGKYSEACSAYGEGLRYDSSNYVLYCNRAVCWSKLGLWEKSVEDCNQALSIQPNCTKALFRRAASNAKLERWADSVKDYEALKHELPRDSEVVESLCQAQLALKKSRGEVFGTKLGVEVEEVSTLDRFKATIASPGVLVVHFKEASNELCEEISPFVNTLCVRYPTVKFIKVEVEECTSIAKAESIRTVPTFKIYANGEKVKEMIRPSHQILEDSVMNCSNM 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0065 687 CDD TRX_family 593 678 - -
Sto4g0065 687 SUPERFAMILY TPR-like 220 309 IPR011990 GO:0005515
Sto4g0065 687 Pfam Thioredoxin 589 671 IPR013766 -
Sto4g0065 687 Pfam Tetratricopeptide repeat 224 286 - -
Sto4g0065 687 SUPERFAMILY TPR-like 458 570 IPR011990 GO:0005515
Sto4g0065 687 MobiDBLite consensus disorder prediction 1 111 - -
Sto4g0065 687 MobiDBLite consensus disorder prediction 47 68 - -
Sto4g0065 687 Gene3D Glutaredoxin 572 684 - -
Sto4g0065 687 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 10 684 - -
Sto4g0065 687 Gene3D Tetratricopeptide repeat domain 217 571 IPR011990 GO:0005515
Sto4g0065 687 MobiDBLite consensus disorder prediction 72 86 - -
Sto4g0065 687 Coils Coil 413 433 - -
Sto4g0065 687 SMART tpr_5 453 486 IPR019734 GO:0005515
Sto4g0065 687 SMART tpr_5 253 286 IPR019734 GO:0005515
Sto4g0065 687 SMART tpr_5 219 252 IPR019734 GO:0005515
Sto4g0065 687 SMART tpr_5 487 520 IPR019734 GO:0005515
Sto4g0065 687 SMART tpr_5 521 554 IPR019734 GO:0005515
Sto4g0065 687 SUPERFAMILY Thioredoxin-like 582 673 IPR036249 -
Sto4g0065 687 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 10 684 IPR044534 -
Sto4g0065 687 SUPERFAMILY TPR-like 330 443 IPR011990 GO:0005515
Sto4g0065 687 MobiDBLite consensus disorder prediction 87 102 - -
Sto4g0065 687 MobiDBLite consensus disorder prediction 1 17 - -
Sto4g0065 687 Pfam Tetratricopeptide repeat 489 520 IPR001440 GO:0005515
Sto4g0065 687 MobiDBLite consensus disorder prediction 18 32 - -
Sto4g0065 687 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0065 Sto-Chr4 548371 551450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0065 220 310 U-box Gene Family AT3G07370 30.769 4.90e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0065 - - jre:108981778 842.032