Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0023 atggGAGGGCAAGAAAAAGAGGTGAACAAGTCCAAAGTTATGAAAATAGATTCAAAGGAATCATGGCAAAACCATATCGCTTCTGCTACCAATCAAGGCTTCCCTGTTATGGTTCATTTTTCTGCTTGCTGGTGCATGCCTTCTGTAGCCATGAATGCTTTCTTTCAACAACTGGCTTCTACCTACAAACATGTTGTGTTTCTCATGGTAGATGTTGATGAGCTTAagGAAGTAGCTTGGAAGATGGAAATAAAAGCAATGCCAACATTTGTATTGGTAAGTGGAGGAGTTGAAGTTGAGAAAATTGTAGGTGCTAATCCTCACCTCATTAGGAAAAGCTTGGATGCTTTTCTTCgaaaaagaaaagaaaagaaaaggcctCACCGGGCATCCGAATTTTCCGGGAACCTCAACTCCGGAATGGTTTCCCCGGAAAACTCTAACTGGTTTTTCGATTATGGCCTAATTGACGACATATCCGTCCCTGATGGGAGCTTCGCTGTCCCTGCATCTGGCTTTACCTGGCCCGCCCAGGCCTTAAATGCTTCTTCCAATGTCAGGACTGGTGCAGCTTATAACGTTCCTTCTTCCTGGAAGAATGTGCTgttaaAGATATGGTTGAATCAGTTGAATGCCAATACCCTCCCCCCTTCACCCGACCTGCAAACAATAAAAGATGCTTACTCatgcatttttcttatttttttgataCCATCTGTTCCTAGTGTGGAAATTGATGGCTCCTTGGGGGATTCTGATGGCCTCAAAGAGCCTGGTTCAAAGAAGAGGGGTAGATCTGATTCATGTGCTGCTTCCAGCTCCAAGGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCCGCTATTTTGATTGATGCTGTGCGAATGGTAACACAGTTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCAAATACAAGCCTTCAAGAGAAGATAAAAGAGTTAAAGGCTGAGAAGAACGAACTTCGTGATGAGAAGCAGAGGCTgaagggagagaaagaaaagttaGAGCAGCAGCTGAAAACTATGAATGTACAGCCTAATTTCTTGCCTCCTCCTCCTGCAATTCCGGCTGCATATGCTGCTGCACAAGGCCAAGCCCCAGGCAATAAGTTGGTTCCATTTATCAGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCGCCGGCTGCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 1299 0.4334 MGGQEKEVNKSKVMKIDSKESWQNHIASATNQGFPVMVHFSACWCMPSVAMNAFFQQLASTYKHVVFLMVDVDELKEVAWKMEIKAMPTFVLVSGGVEVEKIVGANPHLIRKSLDAFLRKRKEKKRPHRASEFSGNLNSGMVSPENSNWFFDYGLIDDISVPDGSFAVPASGFTWPAQALNASSNVRTGAAYNVPSSWKNVLLKIWLNQLNANTLPPSPDLQTIKDAYSCIFLIFLIPSVPSVEIDGSLGDSDGLKEPGSKKRGRSDSCAASSSKACREKLRRDRLNDKFLELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKGEKEKLEQQLKTMNVQPNFLPPPPAIPAAYAAAQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0023 432 CDD bHLH_AtILR3_like 275 350 - -
Sto4g0023 432 SUPERFAMILY Thioredoxin-like 9 119 IPR036249 -
Sto4g0023 432 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 141 186 - -
Sto4g0023 432 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 238 432 - -
Sto4g0023 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 321 IPR011598 GO:0046983
Sto4g0023 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 340 IPR036638 GO:0046983
Sto4g0023 432 CDD TRX_family 20 107 - -
Sto4g0023 432 Pfam Thioredoxin 16 110 IPR013766 -
Sto4g0023 432 MobiDBLite consensus disorder prediction 249 274 - -
Sto4g0023 432 PANTHER BHLH TRANSCRIPTION FACTOR 141 186 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Sto4g0023 432 PANTHER BHLH TRANSCRIPTION FACTOR 238 432 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Sto4g0023 432 Gene3D Glutaredoxin 2 125 - -
Sto4g0023 432 SMART finulus 276 327 IPR011598 GO:0046983
Sto4g0023 432 Pfam Helix-loop-helix DNA-binding domain 274 321 IPR011598 GO:0046983
Sto4g0023 432 Coils Coil 318 373 - -
Sto4g0023 432 Gene3D - 273 351 IPR036638 GO:0046983
Sto4g0023 432 ProSiteProfiles Thioredoxin domain profile. 1 119 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0023 Sto-Chr4 252001 259060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0023 141 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.092 3.32e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g0023 Thioredoxin 3.8e-17 CL0172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0023 - - mnt:21404036 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0400 7 2926465 2927520 Sto4g0023 4 252001 259060 CCT