Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3325 ATGCCCAGACCAAACGGCGTCGCTTGGGTGGACCCCAACACCGAAGACGACGACTCCGCTCCCTCTTCATGGGCTAACACCACCAAGGACGACATGGCTTCTCTTTGTGCCTTGGAGATGGATGAGGATTGGTATATGGCAAACAGTATCATCCAAAATCCCCCAAACATGAACTTCGCTGACCCAGATCCTCTATTGCTCAACCCACTAGACTCCTCCTCTTCCTGTTCCCCATCTCCTTCTGTCTTCAGCCATCTCCACCCGCCATCATCTCAGATTCCCTACTTCCTTCCTTCAAAACCCACCCTCGATCATGCCTTTCTTAACCCTCAAGCTTCCACTACTACCCTACCGTCGGGTTGCGCCGATTTTACTCCAGCCAACAACCACATAACCTTTCCTAATCTCTCCTTAGATCCAAAAACCACCATGCCCCAAAGCAACATCGGGAATTTCGAGCAAGCTTCTGCAAAATCTGTGTTTCTAAATACACCCAAAATCTTGACACCCCTTGAATCGTTACCGCCACCCACTCTGTTTCAGAAGAGAGTGGCTCTTCGGAGGAAATTAATCAATAACGACGTTGAGAGAGAGAACAGTCAAATGAAtgagaagaagaggaaaatgGGTAAATTGGAAGACGTCCAAAATGCTACTTTTGATAGATCCGAATTGAATTACGACTCAGATGAGTTGAATGAGAACGCGAAGAACGGGGGAAACAGCTCAAATGCCAACAGTACGGTGAGTGATaagaaagggaaaaagaatGGCATGCCTGCAAAGAATTTGATGGCCGAACGACGCCGTCGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCCAAGATTAGCAAAATGGACAGGGCCTCAATCCTTGGAGATGCAATTGAGTACCTGAAGGAACTTCTACAAAGGATCAATTACCTCCATAATGAATTTGAGTCAATACCTGCTAACTCATCACTCACTCCTTGCTCTATCTTTCATCCATTGACTCCTGCTCCACCTTCATTACCATGTCGTATAAAGGATGAGCTCTGCCCCAGTTCACTCCCCGGCCCTAATGGCCACCCTGCAAAAGTTCAGGTTTGGTTACGTGAAGGAAGAGCTGTAAATATTCACATGTTCTGTGGCCGGAAGCCTGGCCTCTTGCTTTCAAGCTTGAGAGCTTTGAATAACATTGAGTTAGACATCGAGCAGGCTGTTATTACCTGTTTCAATGGATTTGCTATGGATATCTTTCGAGCCGAGCAATGCAAGGAAGGTCAAGATGTTCATCCTGAGCAAATCAAAGCAGTACTGTTGGATTCAGCTGGTTTCCATACCGTGATCTAG 1350 0.4556 MPRPNGVAWVDPNTEDDDSAPSSWANTTKDDMASLCALEMDEDWYMANSIIQNPPNMNFADPDPLLLNPLDSSSSCSPSPSVFSHLHPPSSQIPYFLPSKPTLDHAFLNPQASTTTLPSGCADFTPANNHITFPNLSLDPKTTMPQSNIGNFEQASAKSVFLNTPKILTPLESLPPPTLFQKRVALRRKLINNDVERENSQMNEKKRKMGKLEDVQNATFDRSELNYDSDELNENAKNGGNSSNANSTVSDKKGKKNGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINYLHNEFESIPANSSLTPCSIFHPLTPAPPSLPCRIKDELCPSSLPGPNGHPAKVQVWLREGRAVNIHMFCGRKPGLLLSSLRALNNIELDIEQAVITCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFHTVI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3325 449 CDD bHLH_AtAMS_like 261 331 - -
Sto3g3325 449 MobiDBLite consensus disorder prediction 255 270 - -
Sto3g3325 449 PANTHER BHLH TRANSCRIPTIONAL FACTOR 130 448 - -
Sto3g3325 449 Gene3D - 250 323 IPR036638 GO:0046983
Sto3g3325 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 325 IPR036638 GO:0046983
Sto3g3325 449 SMART finulus 264 313 IPR011598 GO:0046983
Sto3g3325 449 MobiDBLite consensus disorder prediction 195 231 - -
Sto3g3325 449 MobiDBLite consensus disorder prediction 195 270 - -
Sto3g3325 449 MobiDBLite consensus disorder prediction 1 26 - -
Sto3g3325 449 Pfam Helix-loop-helix DNA-binding domain 265 307 IPR011598 GO:0046983
Sto3g3325 449 Coils Coil 188 215 - -
Sto3g3325 449 MobiDBLite consensus disorder prediction 232 253 - -
Sto3g3325 449 CDD ACT_UUR-ACR-like 378 438 - -
Sto3g3325 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Sto3g3325 449 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 130 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3325 Sto-Chr3 37837418 37841048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3325 163 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 61.364 4.97e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g3325 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3325 - - vra:106778861 462.225