Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3324 ATGGCATCATCAGAGGTATCAATCAAGGGAAATTGTATGAACGGGAAGGGAGAAAGCTACTCTTCTggttataacaacaacaacaacgacGCTAGGAACGCTACAGACGCTCAAAATGCTCATTCATCAGCAGTCAAAGATGCAGAATCTGCGCTTTACAGAGAGTTATGGCATGCCTGTGCTGGTCCCCTTGTCACAGTACCCCGGGAAGGAGAGCTGGTCTTCTATTTTCCTCAGGGACATATAGAGCAGGTGGAGGCGTCCACGAATCAGGTGGCCGACCAGCATATGCCTGTGTACGATCTCCCTTCCAAAATCCTTTGTCGGGTGATCAACGTGATGCTGAAGGCTGAGCCGGACACCGACGAGGTGTTTGCCCAGGTGACCTTGGTTCCTGAGCATAATCAAGATGAAAACGCTGTGGAGAAGGAGCCGCCACCACCTCCACCACCACGATTTCTCGTGCATTCATTCTGTAAAACACTGACGGCATCTGATACGAGTACGCATGGTGGCTTTTCGGTTCTAAGACGACATGCTGATGAATGCCTTCCTCCGCTGGATATGTCAAAGCAACCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCATGCTAATGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCACGTAGACACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTTGCTGGGGAcgcatttatatttttaagGGGTGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGAAATGTTCCATCCTCAGTTATCTCTAGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCCATCTCGACGGGTACCATGTTCACTGTTTATTACAAGCCTAGGACGAGTCCTTCTGAATTTATTGTTCCATATGATCAATATATGGAATCTCTCAAAAATAACTATACCATTGGGATGCGATTCAAAATGAGGTTTGAAGGCGAAGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACCCCCAAAGGTGGGCGGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAGACTTCTAACATACCTCGACCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTTTGAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCCCGGACTAATGCAGTTCCATCATCCCCTGATTCCTCTGTTCTTACTCGAGAAGCGTCATCTAAAGTAAGTATAGACCCTTCACCACCAAGTGGGTATCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTAGCAGAAAGCAATGAGTCTGATACTGCAGAGAAGTCTGTTGCATGGCCACCTGCTGTGGATGATGAGAAGATTGATGTAGTTTCTACGTCAAGAAGGTATGGGTCGGAGAGCTGGATGTCCATGGGGAGGCATGAACCAACATATTCGGATCTACTATCAGGCTTTGGGACTGGCAGAGATTCTTCCCGTCCACCCTTGGTTGATCAACCTGGCCCTGTGGCTAGTCCTGCCCAAAAACATTCGTTGGACCATGAAGGAAAGTTTAATGTGCTAGCTGGTTCGTGGCCTGTAATGCCCTCTAATCTATCACTCAACCTCTTAGATCCAAATATTAAAGGTTCTGCACATGGCGCTGATATAAATTACCAAGCTCCTGGAAATTTGAGGTATGGTGCTTTTGGTGACTACCCTGTGCTCCATGGTCATAAAGTCCAGCATTTACATGGAAATTTATTGATGCCGCCTCCACCTACAACTCGCTATGAGAGTCCCCGTTCAAGAGAGCTGATACCCAAACCAGTGTCAGCACAAGCAAGCGAGGCAGTCAAACCAAAAGATGGGGATTATAAGCTCTTTGGGTTCTCACTTATCAGTAGTTCCATTGCGCCTGAGCCTTCTGTATCACAAAGAAATGTGACTAGTGAGTCACCTGGTCACATGCATCCTAGATCTTATCAGCGTCATACTTTTGAAAGAGATCAGAAGTCAGAACAATCAAGGGGCTCAAAACCAGCCGAAGTTCTAATAGCTATGGATGACCAAGAGAAGCCATTACAAGCTTCTCAGACACATGTGAAAGATGTTCAATCCAAACCACTTAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCACTGGGTAGGTCGGTGGACCTTACAAAGTTCAGCAACTATGATGAATTAGTGGCTGAATTGGACCAGCTGTTTGAATTTGGTGGTGAATTGATGTCTCCAAAAAAGGATTGGCTTATTGTTTATACTGATAATGAGGGCGACATGATGCTTGTTGGGGATGATCCATGGCAGGAATTCTGCGCCATGGTCCGCAAAATTTATATCTACCCAAAAGAGGAGATTCAGAAAATGAGCCCTGGTACTCTAAGTTCAAGGAATGAAGAGAATCAGTCAGTGAGCGAAGATGCAGATGCAAAAGAAGTTGAATATTCAGGGCTGGGAAAGTGGGAACTCTGCTATAAAGCCATCCAGttgaaaaatatgatgtga 2598 0.4592 MASSEVSIKGNCMNGKGESYSSGYNNNNNDARNATDAQNAHSSAVKDAESALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVMLKAEPDTDEVFAQVTLVPEHNQDENAVEKEPPPPPPPRFLVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWAESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRTNAVPSSPDSSVLTREASSKVSIDPSPPSGYPRVLQGQEFSTLRGNLAESNESDTAEKSVAWPPAVDDEKIDVVSTSRRYGSESWMSMGRHEPTYSDLLSGFGTGRDSSRPPLVDQPGPVASPAQKHSLDHEGKFNVLAGSWPVMPSNLSLNLLDPNIKGSAHGADINYQAPGNLRYGAFGDYPVLHGHKVQHLHGNLLMPPPPTTRYESPRSRELIPKPVSAQASEAVKPKDGDYKLFGFSLISSSIAPEPSVSQRNVTSESPGHMHPRSYQRHTFERDQKSEQSRGSKPAEVLIAMDDQEKPLQASQTHVKDVQSKPLSGSARSCTKVHKKGIALGRSVDLTKFSNYDELVAELDQLFEFGGELMSPKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENQSVSEDADAKEVEYSGLGKWELCYKAIQLKNMM 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3324 865 Gene3D - 728 821 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 657 674 - -
Sto3g3324 865 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto3g3324 865 Gene3D - 155 260 IPR015300 -
Sto3g3324 865 MobiDBLite consensus disorder prediction 712 731 - -
Sto3g3324 865 Gene3D - 321 391 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 389 441 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 821 840 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 511 533 - -
Sto3g3324 865 SUPERFAMILY CAD & PB1 domains 734 809 - -
Sto3g3324 865 PANTHER AUXIN RESPONSE FACTOR 2 37 840 - -
Sto3g3324 865 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 840 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto3g3324 865 ProSiteProfiles PB1 domain profile. 732 814 IPR000270 GO:0005515
Sto3g3324 865 SUPERFAMILY DNA-binding pseudobarrel domain 155 287 IPR015300 -
Sto3g3324 865 MobiDBLite consensus disorder prediction 410 432 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 390 408 - -
Sto3g3324 865 MobiDBLite consensus disorder prediction 675 694 - -
Sto3g3324 865 SMART B3_2 158 260 IPR003340 GO:0003677
Sto3g3324 865 Pfam AUX/IAA family 720 819 IPR033389 -
Sto3g3324 865 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Sto3g3324 865 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Sto3g3324 865 MobiDBLite consensus disorder prediction 21 42 - -
Sto3g3324 865 CDD B3_DNA 156 258 IPR003340 GO:0003677
Sto3g3324 865 MobiDBLite consensus disorder prediction 657 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3324 Sto-Chr3 37828315 37832924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3324 1 845 B3 DNA Binding Superfamily AT5G62000 65.202 0.0 1113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto3g3324 AUX_IAA 1.5e-11 CL0072