Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3312 ATGCCTTTTGAAGTAATGGATCGGAGGGGCATGTCTGCCTCATCACACTTTTTTGATGACGTTTCCTTTTGCTCTGAGAGGAATGCCGGATTGCAGAGGCCAAAAGCCTTTCATGACCATTACCAACAAGGAAAGAATGGAATGGTAGCATCTCCTGGCAGTCTTTTGAATCCTTTTTCACCTAGAGAACTTAGTGGAAAGACTGGCTGGCCAATGTCACAGACAGGTCTGTCTGGAGATATTACGGAGAAGTTACTTGTTGGTGGAGAAGAAGGCATTATTGATACGTTTAAGGCTTCTAAGGAGTCGTTAAATCATCATCGCAGATCACAATCTAATTTGTGTATGCAGCCATCATCTAACCCGTATGGTTTAATCGGGGGCAAGATTGTCACTAATGCTGCCTCGTCTGAAAGTAGTCTATTCTCAAGCTCATTAACTGAGATTTTTACCCAAAAATTGAGGTTAAAAGGGACTGATGTTCTACCTCATCAGCCTGCTACTGTGGGTTCCTTTCCCGAGGAGGAACCATATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTGCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCACTAATGACTTGGGAAACAGTACCCATGCCAGAGCAGGTGATGACTTGGAAGATTTTGATTTGTTTAGCTGTGGTGGAGGCATGGAGCTGGAAGGAGACGAACATCTAAGTTCAGGACAAAGGATCAGTGCTATAGATGGAGATTCTGGTTACTTTGGAGGTTTTAAAGGAAACCTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAGGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGATATCCGAACCACTTATACTGCCTGCAAGCACCGTGGATTTGTTATGATATCTTATTATGACATAAGAGCAGCACAAAATGCAATGAAAGCTCTTCAAAATAAGTCATTGAGGTCTaggaaacttgacattcattattCAATACCAAAGGTTAATGCTCCAGAGAAGGATATTAGCCATGGTATGCTGTTGCTATCTGGTCTTGATTCTTCAGTTTCAAATGATGAGCTTCAACAGATTTTTGGATTTTACggagaaattaaaaaaATTAATGAATCTCCAGAAACGAATCATCACAAGTTCATAGAGTTTTACGATGTGCGAGCTGCAGAAGCGGCTCTTCGTGCTTTGAACAGGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGGGTTCAACTGCATCATGTCTGATGCAGCAGTCTCAGAAGGGGCAGGATGAATCTGATCTTGGTCAAATTATATGCGACAACTTATCATTAAGATCAAAGGCTATAACACCTTCTGGAGTAATTGCATCTGGCTGCTTGGATAATGGTTCTAATCAGGGATTTCAATCAACAATACGACCGACTATGAATGGCTTACCCATAAATGGATTCTCACATGTGAATTCTGGCATTCATAATGCTGTGAAGTTTACATCAATTCCTAGATTCCATCCGCATTCCCTCCCTGAGTATCATGATAGTTTAGCTAATGGAAGTCCTTACAACTTTTCAAGCACCATGGGAAATGTGTCTGGCACTATCTGTCCTGCAGTGACAGAAGGCTCTGACAGCAGGAACATGCAGGGAATGGGTTCTACTGGGAAATTGACAGACTTTAATGGAGGAGGAAATGGGAACCACCCTAATCATGGGCTTTATCACATGTGGAATGGATCAAATTTGCACCAGCAACCTCCTCCAAGTGCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCATGTCTTCCGCAGATCCCCAGCTTTCCCAGAACATCACCTCATATGCTGAGAGCATCACATTTAGACCATCATGTCGGATCTGCTCCTGTTGTTACAGCCTCCCCGTGGGAAAGGCAACAAAATTATTTGGCAGAGTCCCCTGAATCCTCTGGTTTCCACATGGGTTCTCTTGGGAGTGCAGGTTTCCCTGGTACTTGGCAATTGCATCCTCCAGAGTTTTCGTCTCACAACATGTTTTCTCATGTTGCTGGGAATGGCATGGATTTGTCACCCAATACTGCACAGAGCTCCCCAAATCAATTGTCACATGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATTCTCCCAATGAGAGAATGAGAAACCTCTATCATCGTAGAAGCGATGCTAACACTAACAATGCTGATAAAAAACAATTCGAACTTGACCTAGGCCGCATAATGCGTGGGGAAGACAGTCGAACAACACTGATGATAAAGAATATTCCTAACAAGTATACTTCGAAGATGCTTCTTGCTGCCATAGATGAACAATGTCGGGGAACTTATGATTTTTTGTATTTGCCAATTGACTTCAAGAACAAGTGTAATGTTGGATATGCATTCATCAACATGACTGATCCTGGTCAGATTATTCCTTTCCACCAGGCTTTTAACGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCGCTTGCATATGCACGAATTCAGGGAAAAGCTGCTCTTATTGCACATTTCCAGAATTCAAGCCTGATGAACGAAGATAAACGGTGCCGCCCTATTCTCTTCCATACAGAAGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTACCAATATTAGGTCAAGACCCGGAAAATCTCGTAGGAGTCCTCCAGCTTCGGCAAGTGGGGAGGAGTCTTCTAACGGAACAAGTTCTTCGGTGGATTCCTCAAGAAACTCAGACTGA 2835 0.425 MPFEVMDRRGMSASSHFFDDVSFCSERNAGLQRPKAFHDHYQQGKNGMVASPGSLLNPFSPRELSGKTGWPMSQTGLSGDITEKLLVGGEEGIIDTFKASKESLNHHRRSQSNLCMQPSSNPYGLIGGKIVTNAASSESSLFSSSLTEIFTQKLRLKGTDVLPHQPATVGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNDLGNSTHARAGDDLEDFDLFSCGGGMELEGDEHLSSGQRISAIDGDSGYFGGFKGNLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTTYTACKHRGFVMISYYDIRAAQNAMKALQNKSLRSRKLDIHYSIPKVNAPEKDISHGMLLLSGLDSSVSNDELQQIFGFYGEIKKINESPETNHHKFIEFYDVRAAEAALRALNRSEIAGKQIKLEPGHPRGSTASCLMQQSQKGQDESDLGQIICDNLSLRSKAITPSGVIASGCLDNGSNQGFQSTIRPTMNGLPINGFSHVNSGIHNAVKFTSIPRFHPHSLPEYHDSLANGSPYNFSSTMGNVSGTICPAVTEGSDSRNMQGMGSTGKLTDFNGGGNGNHPNHGLYHMWNGSNLHQQPPPSAMLWQKTPSFVNGACAPCLPQIPSFPRTSPHMLRASHLDHHVGSAPVVTASPWERQQNYLAESPESSGFHMGSLGSAGFPGTWQLHPPEFSSHNMFSHVAGNGMDLSPNTAQSSPNQLSHVFPGRHPMTSMSKFDSPNERMRNLYHRRSDANTNNADKKQFELDLGRIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRSRPGKSRRSPPASASGEESSNGTSSSVDSSRNSD 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3312 944 SUPERFAMILY RNA-binding domain, RBD 267 428 IPR035979 GO:0003676
Sto3g3312 944 Pfam RNA recognition motif 2 778 874 IPR007201 -
Sto3g3312 944 CDD RRM1_MEI2_like 269 344 IPR034453 -
Sto3g3312 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Sto3g3312 944 Gene3D - 354 449 IPR012677 -
Sto3g3312 944 SUPERFAMILY RNA-binding domain, RBD 780 865 IPR035979 GO:0003676
Sto3g3312 944 SMART rrm1_1 271 339 IPR000504 GO:0003723
Sto3g3312 944 SMART rrm1_1 356 424 IPR000504 GO:0003723
Sto3g3312 944 SMART rrm1_1 780 856 IPR000504 GO:0003723
Sto3g3312 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 422 IPR000504 GO:0003723
Sto3g3312 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Sto3g3312 944 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 942 - -
Sto3g3312 944 CDD RRM3_MEI2_like 781 866 IPR034454 -
Sto3g3312 944 MobiDBLite consensus disorder prediction 889 944 - -
Sto3g3312 944 MobiDBLite consensus disorder prediction 922 944 - -
Sto3g3312 944 Gene3D - 259 353 IPR012677 -
Sto3g3312 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Sto3g3312 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3312 Sto-Chr3 37743412 37749568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3312 265 441 Eukaryotic Initiation Factors Gene Family AT3G16380 24.747 3.94e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3312 - - gmx:100797893 1337.01