Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3275 ATGGCTTCTGCTCTTGTTCGTAGGAGCATTTCCCACACCACTCGGTGCTTCAAGTTCCCTCCTTTTTGCTGTCTCAGTAAGCTATTGCCTCAGCATTCAGCGATTCTTGAGCCCCTCAGTGAAGATGCTGTTCACAAAGTTTCAAATCGCGCTTCGTTTCATTCCCAGGTTGCCGGTGGTGGAGGACTCCCTTCTTCTATGCGTGGAGTTGTGTTCTGGGAATCCGGCAAGCCCATGACCATGGAGGAATTCCATATCCCTCGCCCCAAGGCTGGAGAAATTCTCATTAAAACCAAGGGCTGTGGAGTATGCCACTCTGATCTCCACGTTATCAAAAACGAAATTCCATTTTCTAGTCCTTGCGTGCTGGGCCATGAGGTAACTGGTGAAGTTGTTGAACATGGGCCGCTCACAGATAGCAAAACCATAGAAAGGCTTCCCTTAGGATCTCGAGTTGTTGGATCCTTCATCATGCCTTGTGGTAACTGTTCCTACTGTTCAAAGGGCCATGATGATTTATGTGAAGCCTTCTTTGCTTATAATCGGGCAAAAGGAACCCTTTATGATGGAGAAACTCGGCTGTTTCTTCGCAGCAGTGGAAAACCAGTATATATGTATAGTATGGGAGGGCTTGCCGAATACTGTGTTGTGCCAGCAAATGCTTTGTCAGTATTACCAGACTCATTGCCATATACGGAGTCTGCAATACTTGGATGTGCTGTCTTTACTGCATATGGTGCTATGGCCCATGCGGCTGAGGTGCGCCCTGGGGATTCTGTTGCTGTTATTGGAACCGGGGGCGTTGGTTCTAGTTGTTTGCAGATTGCTAGAGCATTTGGTGCTTCAGATATAATTGCTGTGGATATTCAGGATGAAAAGCTGCAGAAAGCAAAAACATTTGGTGCTACTCACACTGTAAATGCATCGCGAGAAGATCCCATTGAAAAGATAATTGAAATAACTGGTGGAAAGGGTGTTGACGTTGCTGTGGAAGCCTTGGGAAGACCACAGACATTTTCTCAGTGTACACAAAGTGTGAAGGATGGAGGAAAAGCTGTGATGATTGGACTAGCACAAGCTGGTGCTGTAGGACAGATGGATATAAATCGGCTTGTCCGTAGAAAGATTAAAATCATTGGCTCATATGGAGGCAGGGCAAGGCAAGATCTTCCAAAGTTAGTCAGATTGGCAGAAACAGGTATCTTCAATCTTGCCAATACTGTTTCTAGAAAGTACAACTTTGAGGAGGCAGGCAAGGCATTCGAAGATCTCAATCAGGGAAGCATTGTGGGACGAGCTGTCATTGAGATCAGATAA 1317 0.4601 MASALVRRSISHTTRCFKFPPFCCLSKLLPQHSAILEPLSEDAVHKVSNRASFHSQVAGGGGLPSSMRGVVFWESGKPMTMEEFHIPRPKAGEILIKTKGCGVCHSDLHVIKNEIPFSSPCVLGHEVTGEVVEHGPLTDSKTIERLPLGSRVVGSFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRSSGKPVYMYSMGGLAEYCVVPANALSVLPDSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDIQDEKLQKAKTFGATHTVNASREDPIEKIIEITGGKGVDVAVEALGRPQTFSQCTQSVKDGGKAVMIGLAQAGAVGQMDINRLVRRKIKIIGSYGGRARQDLPKLVRLAETGIFNLANTVSRKYNFEEAGKAFEDLNQGSIVGRAVIEIR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3275 438 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 67 436 - -
Sto3g3275 438 Pfam Alcohol dehydrogenase GroES-like domain 92 222 IPR013154 -
Sto3g3275 438 SUPERFAMILY GroES-like 63 270 IPR011032 -
Sto3g3275 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 229 402 IPR036291 -
Sto3g3275 438 SMART PKS_ER_names_mod 65 435 IPR020843 GO:0016491
Sto3g3275 438 Gene3D - 244 381 - -
Sto3g3275 438 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 67 436 - -
Sto3g3275 438 CDD Zn_ADH10 67 436 - -
Sto3g3275 438 Gene3D - 71 427 - -
Sto3g3275 438 Pfam Zinc-binding dehydrogenase 267 397 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3275 Sto-Chr3 37464317 37469060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3275 81 437 Monolignol Biosynthesis Gene Families AT4G37990 25.069 1.63e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3275 - - aprc:113855348 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3275 3 37464317 37469060 Sto3g3275 3 37464317 37469060 ECH