Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3271 ATGAGGATTCAAAAAGAATGGCCTCAGAAATTTGTTGTGGTTCTTCTCTACTCTTATCCTGTGAAACTCAATTGCACCACCATCAACAACCGCATAGTCGACGACGAACCAGAGCTACAAGAACAGCTAAATGGTTACTTCTCCAGAACTTCCCGCGCCAATACATTCAGAGTGTTCTGCCAGGTCGCTAGCCTCTACGACCTCGAATTTGCCGCCAAAGTTGGCCAGGACCGCCTCTCTAAGGTACCTATCTCTAATATAAGGAATTTCTCCATCATTGCTCATATTGACCATGGAAAATCAACCTTAGCTGATAAATTGCTGCAAGTGACTGGTACGGTTCAGCAGCGAGAAATGAAGGATCAGTTTCTCGATAACATGGAtttggagagagaaagaggcaTAACAATTAAGCTACAGGCAGCTCGAATGCGTTATGTTTTTGAAAATGAACCATATTGCTTAAATCTGATAGATACTCCAGGGCATGTTGACTTCTCTTATGAGGTTTCTCGATCACTTGCTGCGTGTGAGGGTGCTCTTCTTGTTGTAGATGCTTCTCAGGGAGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCCTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAATAAGATAGATCTTCCAGGCGCCGAACCAGATCGAGTGATTAAGGAGATTGAAGAGATTGTTGGGTTAGATTGTAGCAATGCAATTCTCTGCTCTGCAAAGgaAGGAATTGGTATAACTGAAATTCTCAATGCAATTGTTACAAGAATTCCACCACCTGCTGATACAGCTGATAGGCCATTGAGGGCTCTAATTTTTGATAGTTACTATGATCCATATAGGGGTGTCATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGAGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTCCAAGTTGAAGAATTATATGCGGGTGAGGTGGGTTATCTTTCAGCATCTATAAGAACTGTAGCTGATGCTAGGGTGGGTGACACTATTACACACTATAGCAGAAAAGCAGAGAAATCATTGCCTGGGTATGAGGAAGCCACTCCAATGGTGTTTTGTGGCCTATTTCCTGTTGATGCAGACCAATTTCCTGAGCTACGTGATGCACTTGAGAAGCTACAGCTTAATGATGCTGCATTGAAGTTTGAGCCTGAGACCTCAAGTGCCATGGGATTTGGCTTTCGATGTGGGTTTCTTGGACTTCTCCATATGGAAATTGTTCAGGAAAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTTGTATATAGAGTGAACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTCCCTGAACCTGGAAAAAGGAAGTCAATTGAGGAGCCATATGTTAAGATTGAAATGCTTACTCCGAAGGATTACATTGGCCCTCTGATGGAACTGGCGCAAGACAGAAGAGGGCTATTTCAAGAAATGAAATTTATCACTGAAAATAGAGCATCGATCACCTATGAATTACCACTGGCAGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCAAGAAGTAAAGGTTATGCTAGCATGGAGTATACTTTCATCGGGTACAACGAAAGTGATTTAGTTAAACTTGACATACAGATAAATGGTGATCCAGTGGAACCATTGTCTACTATTGTTCACAAAGATAagGCATATTCAGTAGGAAGGGCCTTGACACTAAAGTTGAAAGAGCTCATACCACGTCAAATGTTTAAAGTGCCTATTCAAGCATGCATAGGTTCAAAGGTGATTGCTAGTGAAGCTTTATCTGCAATAAGGAAGGATGTATTAGCCAAATGCTACGGTGGGGACATTTCAAGGAAAAAGAAATTACTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAATCAATCGGTAAAGTTGACGTGCCTCAAGAAGCCTTCATGGCGGTTTTGAAACTTGAAAAGGAGGATTAA 2046 0.4042 MRIQKEWPQKFVVVLLYSYPVKLNCTTINNRIVDDEPELQEQLNGYFSRTSRANTFRVFCQVASLYDLEFAAKVGQDRLSKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVQQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGITEILNAIVTRIPPPADTADRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASEKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYSRKAEKSLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPYVKIEMLTPKDYIGPLMELAQDRRGLFQEMKFITENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFIGYNESDLVKLDIQINGDPVEPLSTIVHKDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKED 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3271 681 Pfam GTP-binding protein LepA C-terminus 570 676 IPR013842 -
Sto3g3271 681 CDD EF4_II 273 358 - -
Sto3g3271 681 TIGRFAM small_GTP: small GTP-binding protein domain 88 257 IPR005225 GO:0005525
Sto3g3271 681 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 PRINTS GTP-binding elongation factor signature 132 140 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 PRINTS GTP-binding elongation factor signature 156 166 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 PRINTS GTP-binding elongation factor signature 172 183 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 PRINTS GTP-binding elongation factor signature 208 217 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 79 679 IPR027518 -
Sto3g3271 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 287 IPR027417 -
Sto3g3271 681 Pfam Elongation factor Tu GTP binding domain 86 263 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 75 676 - -
Sto3g3271 681 Gene3D - 450 561 - -
Sto3g3271 681 Hamap Elongation factor 4 [lepA]. 82 680 IPR006297 GO:0005525
Sto3g3271 681 Gene3D Elongation Factor G (Translational Gtpase), domain 3 368 449 - -
Sto3g3271 681 SUPERFAMILY Translation proteins 247 370 IPR009000 -
Sto3g3271 681 TIGRFAM lepA: elongation factor 4 86 677 IPR006297 GO:0005525
Sto3g3271 681 Gene3D - 562 636 IPR038363 -
Sto3g3271 681 PANTHER TRANSLATION FACTOR GUF1-RELATED 75 676 IPR006297 GO:0005525
Sto3g3271 681 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 125 140 IPR031157 -
Sto3g3271 681 CDD EF4_III 375 450 - -
Sto3g3271 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 266 IPR000795 GO:0003924|GO:0005525
Sto3g3271 681 Pfam Elongation factor Tu domain 2 287 357 IPR004161 GO:0005525
Sto3g3271 681 SUPERFAMILY EF-G C-terminal domain-like 374 452 IPR035647 -
Sto3g3271 681 Gene3D Translation factors 268 367 - -
Sto3g3271 681 CDD LepA 88 265 - -
Sto3g3271 681 SUPERFAMILY EF-G C-terminal domain-like 481 576 IPR035647 -
Sto3g3271 681 CDD lepA_C 483 562 IPR035654 -
Sto3g3271 681 Gene3D - 84 267 IPR027417 -
Sto3g3271 681 Pfam Elongation factor G C-terminus 481 567 IPR000640 -
Sto3g3271 681 SMART EFG_C_a 480 568 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3271 Sto-Chr3 37421544 37431149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3271 87 328 Eukaryotic Initiation Factors Gene Family AT3G22980 31.765 5.86e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3271 K21594 - gmx:100784073 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3271 3 37421544 37431149 Sto3g3271 3 37421544 37431149 ECH