Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3252 ATGTCTCTGCACCCTGCTCTGCTTTCGTCTAGCAAAGCATTCCATACCAAACTATGGGTTGTGGCTCACTTGGCAACGCATACCAACACGCCGCCATCGCCCTCTGTCTTCGCCGCCGTGACCGGTCCGCCGCCCTCTCTCTTTGCCTCCGTCGCTTTCGTCGTTCGTCACCAGATTGTCGCTCGTTCAGCCATTCGTTTGCTCAGATCTCGCTTCTCGCCGCCGACTTCCGCCATCTTGCAAGGTGTCTCGAAGATTGATTTTACTATGGCGGAACCCGAGGAAGCCGTGAATTCTGCCGATAACCAACAACCAGAGCCAGTTAATTTCTCTAGAAAGGCAGTTAATAAGAAGAATATCAGAAAACGTACCATAGataatgaagatgatgatggtggcTCGGAATGGGGAAGCTTTGTGCTAAACAGTCAAAGAAAGACCATCAAAGCTGATAATAAATTGTACTTTTCGACCAAAAGCTCCAGATCATCTGAATCCAATGAACAATCTCAAAGGCAAGGGTTTTCGTTTGAATCTTCAAGAGAGATTCAAGTTCAACATGATAGCAGAGCAACAGCAGTACTGGAAACCGAAACTGAATTTTCTAGAGCTCGAGGGTCACATGGGCCTCTCAGGGCTTTAACTCATATAAGAATGTCAGCCATATTGGATCATCAGCCGGACATATGTAAGGATTATAAGGAGACCGGTTACTGTGGTTATGGTGATTCGTGTAAGTTTTTACATGACCGGGGTGATTACAAGTCTGGGCGGCAGTTGGAGAAGGAATGGAATGAAGCAGAGAAAGCCAGGAGGATGAGATAG 825 0.4582 MSLHPALLSSSKAFHTKLWVVAHLATHTNTPPSPSVFAAVTGPPPSLFASVAFVVRHQIVARSAIRLLRSRFSPPTSAILQGVSKIDFTMAEPEEAVNSADNQQPEPVNFSRKAVNKKNIRKRTIDNEDDDGGSEWGSFVLNSQRKTIKADNKLYFSTKSSRSSESNEQSQRQGFSFESSREIQVQHDSRATAVLETETEFSRARGSHGPLRALTHIRMSAILDHQPDICKDYKETGYCGYGDSCKFLHDRGDYKSGRQLEKEWNEAEKARRMR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3252 274 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 250 IPR000571 GO:0046872
Sto3g3252 274 PANTHER ZINC FINGER PROTEIN 183 203 272 IPR039971 -
Sto3g3252 274 PANTHER ZINC FINGER PROTEIN 183 101 203 IPR039971 -
Sto3g3252 274 Gene3D - 227 256 - -
Sto3g3252 274 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Sto3g3252 274 MobiDBLite consensus disorder prediction 94 115 - -
Sto3g3252 274 MobiDBLite consensus disorder prediction 158 184 - -
Sto3g3252 274 MobiDBLite consensus disorder prediction 96 110 - -
Sto3g3252 274 ProSiteProfiles Zinc finger C3H1-type profile. 229 252 IPR000571 GO:0046872
Sto3g3252 274 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 203 272 - -
Sto3g3252 274 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 101 203 - -
Sto3g3252 274 SUPERFAMILY CCCH zinc finger 223 255 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3252 Sto-Chr3 37255437 37260056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3252 93 272 C2H2 Transcription Factor Family AT1G01350 45.726 6.00e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto3g3252 zf-CCCH 1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3252 K13127 - gmx:100787434 223.402