Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3243 ATGGGAGATGGCTCTAGCCACCGTTCTAACAACAGCAGTGGCCATAGCAATAAGCCGGAGTGGCTACAGCAGTACGATCTGATTGGGAAGATTGGAGAAGGCACCTACGGTCTTGTCTTCCTCGCGAGGATCAAGTCCGCCACGAATCGTGGAAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGACGGTGATGGTGTCTCTCCCACCGCTATCCGCGAAATTATGTTACTTAGGGAGATAACACACGAAAATGTCGTCAAGCTTGTGAATGTTCATATCAATCATGCGGACATGTCTCTGTATCTGGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTAGACATCACAGGGACAAAGTCAATCAACCTATTAATCAATACACTGTCAAATCACTACTCTGGCAGCTGCTCAACGGACTAAACTATCTGCACAGTAATTGGATTATTCATCGAGATCTAAAGCCATCAAATATATTGGTTATGGGTGACGGAGAGGAACACGGAATTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAAAATGGAGTTGTTGTAACCATTTGGTATCGTGCACCAGAGTTGCTTCTTGGGGCAAAACATTACACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTGTTGACTTTGAAGCCACTGTTTCAAGGGGCAGAAGTTAAAGCTACACCAAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCCTAGCCAATCTTCCACATTGGCAACAAGATGTGCAGCATATACAAGGGCACAAATACGACAACACTAGCCTCTATAATTTTGTGCACATACCTCCTAAAAGTCCTGCATATGATCTCCTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCTGCTCAAGCTTTGGATCATGAGTATTTCAAGATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGAAATTTGTGAACTACCCCACTCGTCCAGTGGACACAAGTACAGATTTTGAAGGGACAACCAACCTGCAACCTCCACAGGCGGTTTCGTCTGGATCAGCAATTTCTGGTGGCATGCCTGGTGCACATATTTCAAACAGAGCTGTCCGACCAATGAATGTTGTTGGCATGCAAAGGATGCCACCTCAGGCCATGCAAGCTTATAATCTCTCATCCCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGTATACCAATGCAACGTGGCGTTGCTCAGGCCCATCATCAGCAACAGTTGAGAAGAAAAGACCCAGGAATGGGGATGTACCCTCCTCCACAGCAGAAGTCAAGACGTATGTAa 1419 0.4538 MGDGSSHRSNNSSGHSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQPINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGIVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDVQHIQGHKYDNTSLYNFVHIPPKSPAYDLLSKMLEYDPRKRITAAQALDHEYFKIEPLPGRNALVPCQPGEKFVNYPTRPVDTSTDFEGTTNLQPPQAVSSGSAISGGMPGAHISNRAVRPMNVVGMQRMPPQAMQAYNLSSQAGMGGGMNPGGIPMQRGVAQAHHQQQLRRKDPGMGMYPPPQQKSRRM 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3243 472 PANTHER CELL DIVISION PROTEIN KINASE 12 471 - -
Sto3g3243 472 ProSitePatterns Protein kinases ATP-binding region signature. 31 58 IPR017441 GO:0005524
Sto3g3243 472 MobiDBLite consensus disorder prediction 370 390 - -
Sto3g3243 472 MobiDBLite consensus disorder prediction 370 386 - -
Sto3g3243 472 Pfam Protein kinase domain 25 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g3243 472 SUPERFAMILY Protein kinase-like (PK-like) 20 336 IPR011009 -
Sto3g3243 472 Gene3D Transferase(Phosphotransferase) domain 1 107 348 - -
Sto3g3243 472 CDD STKc_CDK8_like 24 335 - -
Sto3g3243 472 MobiDBLite consensus disorder prediction 428 472 - -
Sto3g3243 472 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Sto3g3243 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Sto3g3243 472 SMART serkin_6 25 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g3243 472 ProSiteProfiles Protein kinase domain profile. 25 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g3243 472 PANTHER CYCLIN-DEPENDENT KINASE E-1 12 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3243 Sto-Chr3 37171564 37177395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3243 1 472 Core Cell Cycle Gene Families AT5G63610 77.453 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Sto3g3243 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3243 K02208 - gmx:100813433 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3243 3 37171564 37177395 Sto3g3243 3 37171564 37177395 ECH
Sto3g3243 3 37171564 37177395 Sto4g0252 4 1918629 1925839 ECH