Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3240 ATGAAGAGTGACCAGTTAGACTTACCTCCTGGCTTCAGATTCCACCCAACCGACGAAGAACTCGTCAATCACTACTTGTGCAAGAAATGTGCTTCTCAATCCATTTCTGTTCCCATCATCAAAGAAATCGATCTCTACAAGTTTGATCCATGGCAGCTTCCTgaAATGGCGCTATACGGTGAGAAAGAGTGGTACTTCTTTTCTCCGAGGGACCGGAAGTATCCGAACGGTTCGCGCCCGAACCGGGCGGCGGGATCAGGGTATTGGAAAGCAACCGGAGCCGATAAGCCGATTGGAAAGCCGAAGCCGCTGGGTATCAAGAAGGCTCTCGTGTTCTACGCCGGTAAAGCGCCCCGAGGCATCAAAACGAACTGGATTATGCACGAATATCGTCTCGCGAACGTTGATCGATCTGCTTCCAAGAAGAATAATCTGCGACTTGATGATTGGGTATTGTGCCGGATTTACAACAAGAAGGGGACGATCGAGAAATACAATGGCGGATTGGATCAGAAAACGTCGACGATTCATGAGCATGAGACGAAACCAGTAGTAGTAGTACCTGCAGCACCGGTACCATCGTCGTTGAACTTCGCGAGCGAGCAATTGTATATGGACACGTCGGAGTCGGTGCCGAGGTTGCACACGTCGGACACCAGCTGCTCCGATCACGTGGTGTCGCCGGATGTCACGTGCGATCGGGAGGTCCAGAGCCAGCCCAAGTGGAACAAGGAGGAGCAATTAGGGTTAGGGGTAGGAGACGGTGGGTTTGATTTTGGGTTCTGTAATTACATAGATAGTAATATGAGTCTGAATAGCCTCTCGGGAAATTACCCTTTTGCCCCTCCCGAGCCGTACTCCTCCATGAACCACCTCTCGCCATTGCAGGATATGTTCATGTTTCTACATAAGCCATTCTAA 921 0.5027 MKSDQLDLPPGFRFHPTDEELVNHYLCKKCASQSISVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKPLGIKKALVFYAGKAPRGIKTNWIMHEYRLANVDRSASKKNNLRLDDWVLCRIYNKKGTIEKYNGGLDQKTSTIHEHETKPVVVVPAAPVPSSLNFASEQLYMDTSESVPRLHTSDTSCSDHVVSPDVTCDREVQSQPKWNKEEQLGLGVGDGGFDFGFCNYIDSNMSLNSLSGNYPFAPPEPYSSMNHLSPLQDMFMFLHKPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3240 306 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Sto3g3240 306 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 268 - -
Sto3g3240 306 PANTHER NAC TRANSCRIPTION FACTOR 56 5 268 - -
Sto3g3240 306 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Sto3g3240 306 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Sto3g3240 306 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3240 Sto-Chr3 37147001 37148098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3240 3 306 NAC Transcription Factor Family AT1G01720 64.262 3.24e-130 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g3240 NAM 1.7e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3240 3 37147001 37148098 Sto3g3240 3 37147001 37148098 ECH
Sto3g3240 3 37147001 37148098 Sto4g0257 4 1944844 1945915 ECH