Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3223 ATGGCGGACAAAACTGGCAAGAAACCACTCAGCCTCAACGATAGCCATTACCGATTCCTCCAAGACTTTTCTGCTCCTCCTAAGCCCTCATATGAGGAAAATAGGTCGTCCGAGATAAAGCTCGAAGGCCGAAGCCAACAACAACACGGTAAACCTTTATCGAAGGATAGTATTAGTAAAAACAAAGTTGATGATAGCATCCCTCACTTTTCTGCGATCACTGACTTCGATTCTCCTATCGAGCAACGCTCGGCGGAAGATGAAAAGCCGATCAAGGTAGAAGAAGGTCGACGCCGTCTCTGTAAAGTTTCGGCGAAGGAAAATAGTGAAGATCGAGGTGGTAATATGTTACAGTCTGAGGAGATGACCGACTTTGACGCCCACAAGGGAGAAAAGAAGACGAAGGTTAAAGTGGAAGGGCGTCGTCGCCTATGCAAAGTGTCGTattcagatgatgatgataatactGATGAAACGCTGAATATTGATGAGTCGAAGCTTTCTGACCTTGTGGATTTTGATTCACCTCTTGTGCCATCGAAAAATGTAATTGAGATTGAAGAAAGTGGGGGTAGGAGTGAAATTAGGGATATTTTACACGAATTGACCTCAAAGTTTGATATTCTGTCGATTGAGAGGAACAGACCACCAAAACCAGTGCAGACCATTGAAGATTCTCCAGCTTTGGTTAGAGGCAAAGAAGCTAAGGAAGATAACGCTGTTGATTATGCGAGTGCAGACTCTTCTTTTTCTCCGCAACAGGACCCTAATGACAGCTTATCTGATGCAACTAAGAGTGCTAGTGGTGGTACTGAACTTGTAGAAGATGACTCCGATGATTCCGTTGAAATTTTGGATCAGTATGACTCTGAGAACGCCAGTTCTATAACATATAGTGGTCCAAATTCTACGTACAAGTTACAAGGTAAAATTGCAAAAATGTTGTATCCACATCAGCGGGATGGCTTGAAGTGGCTCTGGTCTCTGCATTCTCAGGGAAAGGGTGGAATCTTGGGAGATGACATGGGTTTGGGAAAGACCATGCAAATTTGTGGCTTTCTGGCTGGACTATTTCATTCGCGTTTAATCAGAAGGGCATTGGTTGTGGCACCAAAAACCCTACTGCCCCATTGGATCAAAGAGTTATCAGCCGTTGGCCTCTCTGACAAGACAAGAGAATACTTTGGAACGTCTACAAAGGCCCGAGAATATGAACTTCAATACATACTTCAGGATAAAGGTGTTCTTCTTACAACATATGATATTGTTCGGAACAATTCCAAGTCACTACGGGGGAATTATCAATCTGATGATGAGGAAAGTGAAGACAGACCCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCAAGCACGCAGAGAGCTAAAAGTTTGCTTGAGATACCTAGCGCCCATCGCATTGTCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCGTTGTTCAATTTTTGTTGTCCTGAGTTGCTTGGTGATAAGAAATGGTTCAAAGATACATTTGAATCACCAATACTTCGGGGAAATGATAAAAAAGCTTCTGACAGAGACAAGCGTGTTGGTTCTTTTGTTGCAAAGGAACTTAGAGACCGTATTCAGCCTTACTTTTTAAGACGTCTAAAGAGTGAGGTTTTTAATCAAGATGATAAGAATACAAGTGCAAAGCTTTCTCAGAAACAAGAGATCATTGTGTGGCTTCGACTAACCAGTATTCAGAGACATCTTTATGAAGCATTCCTGAAGAGTGAGATTGTTCTTTCAGCATTTGATGGTTCACCACTAGCTGCCCTAACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGTGCAGCTGAGGATGTCTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGTTAATGTTGCAGAGAATTTGGCGATGCACATAGCAGATGTTGCTGACACAGACAAGTTCAAAGCTGAGCATGATGTTTCGTGCAAAATAACTTTCATAATGTCATTATTGgataatTTGATCCCAGAAGGGCATCGTGtacttattttctctcaaaCCCGAAAGATGCTTAATCTTGTTCAGGAATCAATATCATCCAAAGGTTATGAATTTTTACGAATTGATGGAACAACAAAAGCCAACGACAGATTAACGATTGTGAATGATTTCCAAAGTGGTGTTGTAGCTCCCATATTTCTTTTGACATCTCAAGTTGGTGGTTTAGGGCTGACACTTACTAAAGCAGATCGCGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGATCGAGCTTATCGTATAGGCCAAACGAAAGATGTTATTGTCTATAGATTAATGACTTGTGGAACAGTGGAAGAGAAAATATACAGGAAGCAGGTATATAAGGGGGGATTATTTAGGACAGCAACAGAGCATAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGAGAGCTTTTCAGTCTCCCAAAAGAGGGCTTTGATGTATCTGTGACTCAGCGGCAATTAGATGAGGAGCATGATTGCAAAGCTACAGTGGATGACTATTTTAAAGCGCACATTGAGTTCCTGAATCGTCTAGGCATAGCTGGAGTAAGTCACCACAGTTTACTCTTTACCAAAACAGAACCAGCTCAAGATCCACCTGAGGATGATGAAGTGACAAGACATCAAGGGACTAGATATGTTGGAGCTTCTGCATCTACTTCTGCCTTTGACCGTATTGCTGCTGCTGAGTTTGCTTTTAATCCAAAGGAGGTCAAATTGAGCAAAAAAAATTCTTCCCCAAGTAGTGCTGGTAAACTGAGTGAATCCGAGATCAAAGATAAAATCAAACGAATTTCTCAGACACTCACAAATAAGGCAATGATTTCTAGATTACCCGATGGGGGGAGAAAATTACAGCAGCGGCTTGCTGAACTAAATTCAGATCTCGCCAAATTGAAGATGGAACAAAGAGCTGTAGTTGATTTGGATGATATAACCGAGGAGTTTCAAAGGGTATTGAATGTGTAA 3066 0.4126 MADKTGKKPLSLNDSHYRFLQDFSAPPKPSYEENRSSEIKLEGRSQQQHGKPLSKDSISKNKVDDSIPHFSAITDFDSPIEQRSAEDEKPIKVEEGRRRLCKVSAKENSEDRGGNMLQSEEMTDFDAHKGEKKTKVKVEGRRRLCKVSYSDDDDNTDETLNIDESKLSDLVDFDSPLVPSKNVIEIEESGGRSEIRDILHELTSKFDILSIERNRPPKPVQTIEDSPALVRGKEAKEDNAVDYASADSSFSPQQDPNDSLSDATKSASGGTELVEDDSDDSVEILDQYDSENASSITYSGPNSTYKLQGKIAKMLYPHQRDGLKWLWSLHSQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSDKTREYFGTSTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYQSDDEESEDRPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIVISGTPLQNNLKELWALFNFCCPELLGDKKWFKDTFESPILRGNDKKASDRDKRVGSFVAKELRDRIQPYFLRRLKSEVFNQDDKNTSAKLSQKQEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAENLAMHIADVADTDKFKAEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLVQESISSKGYEFLRIDGTTKANDRLTIVNDFQSGVVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTCGTVEEKIYRKQVYKGGLFRTATEHKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDCKATVDDYFKAHIEFLNRLGIAGVSHHSLLFTKTEPAQDPPEDDEVTRHQGTRYVGASASTSAFDRIAAAEFAFNPKEVKLSKKNSSPSSAGKLSESEIKDKIKRISQTLTNKAMISRLPDGGRKLQQRLAELNSDLAKLKMEQRAVVDLDDITEEFQRVLNV 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3223 1021 MobiDBLite consensus disorder prediction 243 280 - -
Sto3g3223 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 552 IPR027417 -
Sto3g3223 1021 MobiDBLite consensus disorder prediction 20 137 - -
Sto3g3223 1021 MobiDBLite consensus disorder prediction 122 137 - -
Sto3g3223 1021 CDD SF2_C_SNF 664 795 - -
Sto3g3223 1021 SMART helicmild6 701 784 IPR001650 -
Sto3g3223 1021 MobiDBLite consensus disorder prediction 80 109 - -
Sto3g3223 1021 PANTHER OS04G0692700 PROTEIN 291 897 - -
Sto3g3223 1021 Pfam Helicase conserved C-terminal domain 672 784 IPR001650 -
Sto3g3223 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 675 834 IPR001650 -
Sto3g3223 1021 MobiDBLite consensus disorder prediction 244 268 - -
Sto3g3223 1021 SMART ultradead3 310 510 IPR014001 -
Sto3g3223 1021 Gene3D - 574 870 IPR027417 -
Sto3g3223 1021 Gene3D - 289 573 IPR038718 -
Sto3g3223 1021 Coils Coil 981 1001 - -
Sto3g3223 1021 Pfam SNF2-related domain 326 622 IPR000330 GO:0005524|GO:0140658
Sto3g3223 1021 PANTHER SNF2/RAD54 FAMILY MEMBER 291 897 - -
Sto3g3223 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 502 IPR014001 -
Sto3g3223 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 866 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3223 Sto-Chr3 36974570 36982581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3223 315 838 RAD5 or RAD16-like Gene Family AT1G02670 24.433 2.15e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto3g3223 SNF2_N 2.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3223 K20093 - gmx:100779283 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3223 3 36974570 36982581 Sto3g3223 3 36974570 36982581 ECH