Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3219 ATGAAGAAAGTGATCCCTGCGAATGGGAAGATCTCAAAGGACGCAAAAGAGACCGTTCAAGAATGTGTGTCCGAGTTCATCAGTTTTGTGACGGGAGAAGCATCGGATAAATGccagagggagaagaggaagaccaTCAATGGAGATGATATTATTTGGGCCATCACAACATTGGGCTTTGAGGATTATGTGGACCCATTGAAATCGTACCTTCAGAAGTACAGAGACATTGAAGGAGAAAAAATTATCCCCAAACACGGTCTTAAAAAGCTCCCGAACCTGCGTCTCCTTCCCTTCATTACTATACTCAAAGGAGAACGTCTCCTTCCACGGCAGCTTACTCGAATACCGATCCGCGTGAAACCCGGAATACCCGGACACGTCACCGTGCTTCCTTCTCGCTCTCAGCTTCGTCTCCAGCGGCAGCCCAAATATCGACTCCATCTCCGCGTAAGCCGCGCCGATCAGCCCCGGCTCCACGCCGTGGTTCGTCACCTGGAAGAACCCGTGGTTCAGGCACGCCTCGCGCACCATCGCCGCGGCTCGGGCCGCGGCTCCCGGGTCGGCGCCCGCGAAGCCGGCCAGGTCGATGAGCGGCTCGTTGAGCTCCTCCGTCATTGCGGCTCCCGCGAGGTCGCAGGATGA 645 0.5349 MKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDIEGEKIIPKHGLKKLPNLRLLPFITILKGERLLPRQLTRIPIRVKPGIPGHVTVLPSRSQLRLQRQPKYRLHLRVSRADQPRLHAVVRHLEEPVVQARLAHHRRGSGRGSRVGAREAGQVDERLVELLRHCGSREVAG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3219 214 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto3g3219 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 86 - -
Sto3g3219 214 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Sto3g3219 214 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Sto3g3219 214 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Sto3g3219 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Sto3g3219 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 86 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto3g3219 214 SUPERFAMILY Histone-fold 1 81 IPR009072 GO:0046982
Sto3g3219 214 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3219 Sto-Chr3 36944881 36949286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3219 1 82 CCAAT-HAP3 Transcription Factor Family AT2G13570 91.463 1.54e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto3g3219 CBFD_NFYB_HMF 3.8e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3219 K08065 - jre:108996185 163.696