Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3209 atGACAGAGAAGGCATTGTCAAGTGGAAATGAATTGTATTTCTTCACGAGATTGAAGCAAAAGAGAGAGACAGAAAGTGGGTTTTGGAAGGAAATTGGTGTGACTGAACCAATAGTCTCAGCTAATTATAATTCTGcaggcaacattaataataatgttGGCTTCAagaaatatctagttttcacCATTAATGGATCAAACCAAGAAGCTCATGAAACCAATTGGCTAATGCAGGAGTATCATCTTTTGTCCTCTTTTCATTCAACAACACCAAGACCTGCAGAATGTGAAAGACAGAGTAAATGGGTTTTATGCCGAGTGTATGAAAGGAAGAGAGattttgaagaagaagatgatggtgcAAGCACAGAGCTTTCATGGGTAGATGAAGTTTTTATGTCTTTGTTAGATGATGATGTTGAACAAATTAGCTTTCTCaattag 444 0.3176 MTEKALSSGNELYFFTRLKQKRETESGFWKEIGVTEPIVSANYNSAGNINNNVGFKKYLVFTINGSNQEAHETNWLMQEYHLLSSFHSTTPRPAECERQSKWVLCRVYERKRDFEEEDDGASTELSWVDEVFMSLLDDDVEQISFLN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3209 147 SUPERFAMILY NAC domain 4 109 IPR036093 GO:0003677|GO:0006355
Sto3g3209 147 PANTHER NAC TRANSCRIPTION FACTOR 56 2 141 - -
Sto3g3209 147 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 141 - -
Sto3g3209 147 Gene3D NAC domain 1 116 IPR036093 GO:0003677|GO:0006355
Sto3g3209 147 ProSiteProfiles NAC domain profile. 1 110 IPR003441 GO:0003677|GO:0006355
Sto3g3209 147 Pfam No apical meristem (NAM) protein 6 82 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3209 Sto-Chr3 36861064 36862086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3209 1 133 NAC Transcription Factor Family AT1G69490 33.793 3.09e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g3209 NAM 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3209 - - gmx:100779578 132.109