Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3206 ATGAAAGAATCTCAAATCACCATTACTACTCCTCCTATATTCAGATGCCCCATAAGTCTAGACCTTTTTCAAGACCCAGTGACTCTATGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGCTTTCTTTAGGTAATCTCACTTGTCCTGTCACAATGCAGAAGCTTCATGATTTATCCATTATTCCCAATCACACTCTTCGCCATTTGATTCATCAATGGCTTCTTCAGATTCACCAATTTGACCCATTTTCTGCTTCCTTGTCTTCTCTCAAACACACCCTTCAGTCCAATGAATCCACCTTGCACAACAAGCTTCAAGCTCTTGAAGAAATCAATGCCTTGTCTGATGAATATTGTTTCTTCAACAAATCTTGTTTCCTTCAATTGGGTTTCTTACCACTTCTCTTGGAACAAGTTCTTGATTCTCAAAACCCCATAAGTTTTACAGAATTAGCACTTTCTTGTGTTGTTAAATTGCTTCCCCTTGGGTTTTTACACCCTTTGGATATACTCAAGGAAGAATCTAGATTTCAAAAATTCCTGCTTTTATTTGAAAAGGGTACTATTTCTATAAAGACCAGTCTTTGTCATGTCAtagattcatcatcatcatcatcatcatcatcagaagAGGTATGTTCAAAGCTTGGAAGCTCTCAGAAACTAGTCAATgaaatccttcttcttcttcatcaccaAAACTGTGAGGCTTCTGCAATTAAAGCCATATCAGCATTATGTTCTTGTGAATCAAACATGGAGAATTTGGTAAGAGCAGGAGCCATAGAGGAGATCATAATGAAGATTTCAGGttcagaaagaagaaaagatgagaACTTGGGTGTATTGGGAATGTCAATAGTGGAGAAACTTGTGGGGTTAAATAGTGGGAAAGAGGGATTAGTGAAAAGCCCAAGAAGTATAAAGGGTTTGGTGAAGATGGTTTTTAGTTTCAAGGCATGTGATAATAGTAGTGAAGAGTGTAGTGAGATTGCTGTTGGGTTACTTTTGAGAATGTGTGAAGAAGAGGAGGATGAGAATGGAAGAGAAGAAGCCATTGATGGTGGAATTGTGACTCAGCTTTTGTTGCTTCTGCAAAGCCAATGTAGCAACACAACAAAAGCAAAGGCAAGAAAGCTGCTCAAGTTGATAACATCAAAGTGGGTCTAA 1179 0.3588 MKESQITITTPPIFRCPISLDLFQDPVTLCTGQTYDRSSIEKWLSLGNLTCPVTMQKLHDLSIIPNHTLRHLIHQWLLQIHQFDPFSASLSSLKHTLQSNESTLHNKLQALEEINALSDEYCFFNKSCFLQLGFLPLLLEQVLDSQNPISFTELALSCVVKLLPLGFLHPLDILKEESRFQKFLLLFEKGTISIKTSLCHVIDSSSSSSSSSEEVCSKLGSSQKLVNEILLLLHHQNCEASAIKAISALCSCESNMENLVRAGAIEEIIMKISGSERRKDENLGVLGMSIVEKLVGLNSGKEGLVKSPRSIKGLVKMVFSFKACDNSSEECSEIAVGLLLRMCEEEEDENGREEAIDGGIVTQLLLLLQSQCSNTTKAKARKLLKLITSKWV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3206 392 PANTHER WDSAM1 PROTEIN 9 390 IPR045185 GO:0061630
Sto3g3206 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Sto3g3206 392 Gene3D - 84 391 IPR011989 -
Sto3g3206 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Sto3g3206 392 CDD RING-Ubox_PUB 14 56 IPR045210 -
Sto3g3206 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Sto3g3206 392 SUPERFAMILY RING/U-box 4 80 - -
Sto3g3206 392 SUPERFAMILY ARM repeat 91 384 IPR016024 -
Sto3g3206 392 PANTHER OS02G0542800 PROTEIN 9 390 - -
Sto3g3206 392 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3206 Sto-Chr3 36841975 36843153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3206 8 373 U-box Gene Family AT3G19380 30.233 5.19e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3206 - - gmx:100815247 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3206 3 36841975 36843153 Sto3g3206 3 36841975 36843153 ECH