Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3194 ATGGCTACAACAAAATTGATTCCTGGATTTCGGTTTCATCCGACTGATGTTGAGCTGCTTAAATACTTTCTGAAGAGGAAGGTTATGGGAAAGAAATTCTTCTTTGATGTGATTGCCGAAGTCGACATTTATAAGTATGCTCCGTGGGATCTCCCTGataaatCCTGCCTGAGAACTGGAGATTTAGAATGGTACTTTTTTAGCCCTAGGGAGAAGAAATATGCCAATGGGGCAAGAATCAAGCGTGCTACAGAAGTTGGAGCTCCTAAAGGAGAGAGAACTGATTGGGTCATGCATGAATATATACTCGACGATAAGGATCTGACTGACAAAGGCATTCCTCAGGATTCCTATGTGCTTTGTAAGGTCTTCCAAAAGGAAGGTCCAGGTCCTAGAAATGGTGCCCAATATGGAAAACCATTCAATGAAGAAGACTGGGACAATGATGAGGAAGTTGAATGTGTAGATTCTATCCCTTTAGTTGATATGTCTGCTTCTTCGCTTCCAATTCTGCCCATTACACATCATAGTTCTGTTGCAATTGACAAGCATCCCCCTGCAAGTGGATGTATTGGGTCACCATCTGTGTCATGTCTTACAGGAGTAGAGACGCTGTCTACTCCTATGATGCATCCTTCAGTTCCCAGTAATAAAGTTATATCCAATGACGGTTCTCTAGTTCCAATTCATGATGATATTGCTTCAATGTTGGATTGTTTCACTGAGGATGACTCCCTGGCTTTGAATGGAAACAAAATTCAGTTTTTGTCTGTTGAAGCATTCCAGCTGGCTTTCTGCTTAGCAGATACCCTTGAAAAAATTGATGATGCTAATCAGAAAAATAATGGTGAAGAGGCACCTGGTTTGGACGTGAATGATATTTTCAAGGACTTGGGAGATATTGGCAACTGGGGTGGTGGATGGGAAGACAAACATGACTATACAAACCAGATGTTTCCTACTACAGCTAGTAGTATGTCCTCCATGGGGTGGAGTGACTCTGACTTCTTGGAGTTGCTTGACCTCGAGCCATTTGATCCACAAAAGCAAGGGAAGGATAGGAGCAGCATTAATGAGTAG 1080 0.4222 MATTKLIPGFRFHPTDVELLKYFLKRKVMGKKFFFDVIAEVDIYKYAPWDLPDKSCLRTGDLEWYFFSPREKKYANGARIKRATEVGAPKGERTDWVMHEYILDDKDLTDKGIPQDSYVLCKVFQKEGPGPRNGAQYGKPFNEEDWDNDEEVECVDSIPLVDMSASSLPILPITHHSSVAIDKHPPASGCIGSPSVSCLTGVETLSTPMMHPSVPSNKVISNDGSLVPIHDDIASMLDCFTEDDSLALNGNKIQFLSVEAFQLAFCLADTLEKIDDANQKNNGEEAPGLDVNDIFKDLGDIGNWGGGWEDKHDYTNQMFPTTASSMSSMGWSDSDFLELLDLEPFDPQKQGKDRSSINE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3194 359 Gene3D NAC domain 87 128 IPR036093 GO:0003677|GO:0006355
Sto3g3194 359 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 87 - -
Sto3g3194 359 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 88 202 - -
Sto3g3194 359 Gene3D NAC domain 15 86 IPR036093 GO:0003677|GO:0006355
Sto3g3194 359 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Sto3g3194 359 PANTHER PLANT NAC DOMAIN PROTEIN 88 202 - -
Sto3g3194 359 PANTHER PLANT NAC DOMAIN PROTEIN 1 87 - -
Sto3g3194 359 Pfam No apical meristem (NAM) protein 8 87 IPR003441 GO:0003677|GO:0006355
Sto3g3194 359 SUPERFAMILY NAC domain 4 126 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3194 Sto-Chr3 36743949 36747022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3194 1 255 NAC Transcription Factor Family AT5G09330 45.151 3.27e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g3194 NAM 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3194 - - adu:107470479 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3194 3 36743949 36747022 Sto3g3194 3 36743949 36747022 ECH