Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3182 ATGACTCCTCCTTCTCCTAATTCttcttctaataataataatattaataacaatttccTCTTCTCTCCTCCCATATTGCAACCACAACCACCAGAGGAAGCATTAGAGCCTGAAGAGGAATTAGGGGCAATGAAGGAAATGATGTACAAGATGGCCGTTATGCAGCCGGTGGACATCGATCCCGCCACCATCCGCAAACCGAGGCGCCGGAATGTCCGCATCAGCGACGATCCCCAGAGCGTGGCCGCCCGCCACCGTCGCGAGAGGATCAGCGAGAAAATCCGCATCCTCCGCCGGCTCGTCCCCGGCGGGTGCAAGCTCGATACCGCCTCCATGCTCGACGAAGCCATTCACTATGTGAAGTTTCTCAAACGGCAAATTAGGTTGCTCCAACCCACacaaattgcacaatattccGATCATAATAACAATATTGCCAATACTACGGCCTCTGCTGCGTCAGCCACAACCGTTATTGCTGATTGGGCTTTTGCCCCAAATTTACTACAAAATTCCACTGCCATTGCCGAGGCTGGAATCGGGTTTGTTGACGGCTCGTCCGGCTGCTTTAATAATGAGGTAGGCTTTTCTGGTGTATGA 600 0.485 MTPPSPNSSSNNNNINNNFLFSPPILQPQPPEEALEPEEELGAMKEMMYKMAVMQPVDIDPATIRKPRRRNVRISDDPQSVAARHRRERISEKIRILRRLVPGGCKLDTASMLDEAIHYVKFLKRQIRLLQPTQIAQYSDHNNNIANTTASAASATTVIADWAFAPNLLQNSTAIAEAGIGFVDGSSGCFNNEVGFSGV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3182 199 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 165 - -
Sto3g3182 199 CDD bHLH_AtIND_like 75 132 - -
Sto3g3182 199 Gene3D - 77 147 IPR036638 GO:0046983
Sto3g3182 199 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 165 IPR045843 GO:0003700|GO:0006355
Sto3g3182 199 Pfam Helix-loop-helix DNA-binding domain 84 123 IPR011598 GO:0046983
Sto3g3182 199 MobiDBLite consensus disorder prediction 1 32 - -
Sto3g3182 199 MobiDBLite consensus disorder prediction 1 23 - -
Sto3g3182 199 SMART finulus 80 129 IPR011598 GO:0046983
Sto3g3182 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Sto3g3182 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3182 Sto-Chr3 36664178 36666114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3182 19 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 68.595 1.49e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g3182 HLH 6.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3182 - - gmx:100777351 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3182 3 36664178 36666114 Sto3g3182 3 36664178 36666114 ECH