Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3175 ATGGCTCCGGCCACCTCCACCGCAGCCGCGGCGGCGGCTCAGAGGATTATCGGCTTCAGTCGCCGCACGCGAGCTCCTCGCCAGTCGTCGCCGCCGACGAAGAAGTATAAGTCTATTTCGGAGATAATGTTAAAAGCTCCGTATGCTGTCATTGAGCGGGAGGATTACAGCGACGTGACGTGTGACCAATGCGGCTCTGGTGAACAACCGGACGAGCTGCTTCTGTGTGACAAATGCGATAAAGGATTCCATATGAAATGCGTGAGGCCCGTCGCCGTGAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTAAGAAGTAGGGgtTTCTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAGTGCACTGATCGTAAAGACGAATGCTGTTCTCTGCAAGATGCTAAGAAGCGTAAGAGGCGTACAGGATCACTGGTATTGCAAAAGAAACGAAGGAGATTTTTGCCATTTATTCCTACAGAAAATCCTTCCCAGAGAATGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTTACCTACTCACCTGATATGGCTCCTAGGTCTGCTAATCATGCCGAGTTTGAAAATGGTGGCATGCAGgtTCTTACCAAGGAAGATACTGAGACCATGGAACACTGCAGAGCGATGTGCAGAAGAGGCGAATGCCCTCCTCTTATGGTTGTTTATGATTCATGTGAAGGATATACTGTAGAGGCAGATGGCCCAATCAAGGATATGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGGGAACATGATGATTGTGACAGTTTGATGACCCTTCTTCTAGCAAAGGATCCTACTAAAAGTCTAGTCATCTGCCCAGATAAACGAGGAAATATTGCTCGCTTTATTAGTGGCATCAACAATCATACACAGGACGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTTAATGGTGAATGCAGGGTCCTTTTGGTTGCAACTCGCGATATTTCTAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCAGAATTTTATCTGA 1128 0.4574 MAPATSTAAAAAAQRIIGFSRRTRAPRQSSPPTKKYKSISEIMLKAPYAVIEREDYSDVTCDQCGSGEQPDELLLCDKCDKGFHMKCVRPVAVRVPIGSWLCPKCSGGKRVRSRGFSQKKIIDFFRIQKCTDRKDECCSLQDAKKRKRRTGSLVLQKKRRRFLPFIPTENPSQRMKQMGSLASALTALHMEFSDDLTYSPDMAPRSANHAEFENGGMQVLTKEDTETMEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLAKDPTKSLVICPDKRGNIARFISGINNHTQDGRKKQNCKCVRYSVNGECRVLLVATRDISKGERLYYDYNGYEHEYPTQNFI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3175 375 ProSitePatterns Zinc finger PHD-type signature. 61 105 IPR019786 -
Sto3g3175 375 CDD PHD_RSF1 61 105 - -
Sto3g3175 375 ProSiteProfiles Zinc finger PHD-type profile. 58 108 IPR019787 -
Sto3g3175 375 SMART PHD_3 60 106 IPR001965 -
Sto3g3175 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 127 IPR013083 -
Sto3g3175 375 Gene3D SET domain 147 375 IPR046341 -
Sto3g3175 375 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 20 372 - -
Sto3g3175 375 SUPERFAMILY FYVE/PHD zinc finger 48 111 IPR011011 -
Sto3g3175 375 Pfam SET domain 274 363 IPR001214 GO:0005515
Sto3g3175 375 SUPERFAMILY SET domain 226 363 IPR046341 -
Sto3g3175 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Sto3g3175 375 PANTHER HISTONE ACETYLTRANSFERASE 20 372 - -
Sto3g3175 375 CDD SET_ATXR5_6-like 238 375 - -
Sto3g3175 375 Pfam PHD-finger 61 106 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3175 Sto-Chr3 36619198 36622558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3175 32 124 C2H2 Transcription Factor Family AT3G01460 34.021 1.58e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto3g3175 SET 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3175 K24406 - qsu:112038577 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3175 3 36619198 36622558 Sto3g3175 3 36619198 36622558 ECH