Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3172 ATGCTGAGCTGTGATGAAGGAGACAGTGATAATGATGTATTCTTCGACACAGCAGATTgtctgtcttcttcttcttctcctattTCCTACAATGAGTTTGAGTACGAGATTTGGGTGAATGAGCCTCAGAGTGTGAAGGAAAGAAGACAACGTTTTCTAGAAGGAATGGGTTTGTCTGAGATGAGAAATGAAACATCATCACTCTCAAATCTGTCTCAGAATTCGATCCTCCCAGGTTCTTCTGAAAcatcaccttcttcttcttctgatcAAGCATACCACATGTTTGATGAAATGCAATTGTGCTTGAAAGATGAAGCTGAGGAGgctcaagaagaagaagatggggaTTTTGATGATGAGGGTAAGAAGaatgagaaggagaagaagaagaagaagagaaactgGTGGTGGAAGAGATTTGTGAGCAAAACCAGATCAAAGAAAAGTCATAACAGGATAAAGgtgaagcagaagaagaagaggtggatAGAGTTCAGTGGGGTGTATATAGGACAAGAGATTAAAGCTCACAATGGGATTATTTGGACTATGAAATTTAGTCCCAATGGGAAGTACTTAGCAAGTGGAGGAGAAGATGGTGTTGTGAGAATATGGAGTGTACTATTGCAAGAAACatcagcatcatcatcatcagaagAAGACAACCTTGTTAATGAAGTGAAACAAGACATGTTCATCCAAAACTCCTCCATTATTGTGCTTCCAAACAAGGTCTTCCATATTGAGGAATCCCCATTACAAGAACTCTATGGTCATACCAATGATGTGTTGGATTTGGCATGGTCTAATTCAGAATCTGATATTCTCCTATCATCTTCCATGGATAAAACTGTTCGATTGTGGCGAATCGGTTGTGATCAATGCTTGCGCGTGTTCCATCACAATGACTATGTGACTTGCATTCAAGTCAATCCAGTTGATGCAAATTACTTCATTAGCGGATCGATCGATGGGAAAGTTCGAATATGGGGATTACACGAAGAACGAGTGGTTGATTGGGCAGATATACATGATGTAATTACTGCTATAAGTTACCAGCCAGATGGAAAAGGATTTCTAGTCGGCTCGCTTTCGGGCACTTGTCGCTTTTACGTTGCTTCAGGCAAACATTTCGAGCTCGAAGCACAGATTCGTGTCGATGGCAAGAAGAGATCAGGTGGCAACAAGATTACTAGCATTCAGTTTTCTCAGGAGAAGCATCAGAGAGTTTTGATCACATCAGAAGATTCGAAACTTCGCGTATTGGAAGGTGTCGACGTAGTCCACAAATACAAAGGTCTTCCCAAATCAGGAAGCCAGATGAGTGGTTCATTTACTTCAAATGGAAGCCATATGATTTCGGTTGGACAGGACAGTCGTGTTTATATTTGGAACGCGGCTGCGGCGAGTGACACGGAAGAAACCCCGTCACCAAAACACGCGAAATCCTACCGGTCCTGCGAGTACTTCTCCTCGGAGGGTGTTACCGTAGCATTACCTTGGTCAGCAAGCATGAGCACACAACACCAAATGGTGAAAGACATTGGTTTTGCTCACTCTTGTTCAGAAATGCACTCGGAGCGTCTTCCTCGCGCTAACAATTGGTTCTCCATCGACGGCACGTGCAGCCGAGGCTCGATGACGTGGCCCGAGGAGAAGCTTCCTAGTTGGGACTACTACTCGGACGAGTATCTCGAGCAGAATCTATGTCCCAAGGATCCTTGGGGATTGTCTATTGTCACAGGTAGTAGTGATGGAACTATCAGAACATTCCACAACTTTGGATTGCCTGTTAGGCTTTAG 1806 0.3987 MLSCDEGDSDNDVFFDTADCLSSSSSPISYNEFEYEIWVNEPQSVKERRQRFLEGMGLSEMRNETSSLSNLSQNSILPGSSETSPSSSSDQAYHMFDEMQLCLKDEAEEAQEEEDGDFDDEGKKNEKEKKKKKRNWWWKRFVSKTRSKKSHNRIKVKQKKKRWIEFSGVYIGQEIKAHNGIIWTMKFSPNGKYLASGGEDGVVRIWSVLLQETSASSSSEEDNLVNEVKQDMFIQNSSIIVLPNKVFHIEESPLQELYGHTNDVLDLAWSNSESDILLSSSMDKTVRLWRIGCDQCLRVFHHNDYVTCIQVNPVDANYFISGSIDGKVRIWGLHEERVVDWADIHDVITAISYQPDGKGFLVGSLSGTCRFYVASGKHFELEAQIRVDGKKRSGGNKITSIQFSQEKHQRVLITSEDSKLRVLEGVDVVHKYKGLPKSGSQMSGSFTSNGSHMISVGQDSRVYIWNAAAASDTEETPSPKHAKSYRSCEYFSSEGVTVALPWSASMSTQHQMVKDIGFAHSCSEMHSERLPRANNWFSIDGTCSRGSMTWPEEKLPSWDYYSDEYLEQNLCPKDPWGLSIVTGSSDGTIRTFHNFGLPVRL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 208 - -
Sto3g3172 601 Pfam WD domain, G-beta repeat 295 331 IPR001680 GO:0005515
Sto3g3172 601 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Sto3g3172 601 Pfam WD domain, G-beta repeat 174 207 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 425 466 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 378 424 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 168 207 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 293 332 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 334 373 IPR001680 GO:0005515
Sto3g3172 601 SMART WD40_4 250 290 IPR001680 GO:0005515
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 333 - -
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 341 IPR001680 GO:0005515
Sto3g3172 601 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 601 - -
Sto3g3172 601 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Sto3g3172 601 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Sto3g3172 601 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Sto3g3172 601 SUPERFAMILY WD40 repeat-like 172 591 IPR036322 GO:0005515
Sto3g3172 601 MobiDBLite consensus disorder prediction 107 126 - -
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 291 - -
Sto3g3172 601 PANTHER WD REPEAT DOMAIN 44 5 601 IPR040324 -
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 299 IPR001680 GO:0005515
Sto3g3172 601 Gene3D - 165 511 IPR015943 GO:0005515
Sto3g3172 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 208 IPR001680 GO:0005515
Sto3g3172 601 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3172 Sto-Chr3 36597039 36599963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3172 254 463 U-box Gene Family AT2G33340 27.397 2.27e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3172 K20241 - gmx:100801576 652.129