Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3171 ATGGTGAGAGACGATCTCTACATCACAGTTCCGAGCTTCTTCCGGTGCCCGATATCTCTCGACGTGATGAAATCTCCGGTGAGTCTCTGCACCGGCGTCACCTACGACCGTTCCAGCATCCAACGCTGGCTTGACAACGGCAACAACACCTGTCCCGCCACCATGGACATGGAGGATGGCCGCCGTATGGATTCGCTAACAGGAATTGTGTATTTCGCGGAAGAATCTGAAGAGAATCGCGAATTCCTCGCGAAATCGGACGGATTCGTGCCCATGCTCGTTGGATTGCTCAACGACAATGTCGATTCCGGAGTTGAATTTCTGGAGAAAGTCGTTAGTGCGTTGGAtttgattttgaataaaatCGAAAACCGCGAGCAATTGAAGAGATCGATGTTGAAGAGCCACGATAATTGCTTGGACTCTCTGCTTCTCGTTCTGAAACAAGGAAGCAGCACGAATTCGAAAATCGGATCGGCGAGGATTCTGAAATTCATCGCCGTCGACACCGAGTCGAAGATCATGATCGCGGAGAAGGACGGCGTGGTATCGGAACTGCTCAAATCAATCGCGCCGGAGGAAGACCCTGCGCTGATCGAAAACGGCTTGTCGTGTTTAGCGGCAATCTCGACGCCGAAACGCAACAAATTTAAAGTCGTTCATCTCGGAGCGATCAAGACGCTCTCGCGACTACTCTCAGGATCGAATTGGAGCGTCTCGGTCACGGAGAAGGTGCTGAAGCTGCTTGAAACGGTGTCGTCGACGAAGGAAGGGAGGTCGGAGATCTGCGAGGATCCGTCGTGCGTGGCGGCGATATTGCAGAAGGTTCTGAAAGTGTCGAGCGTCGCGACGGAGCACGCGGTGACGATACTGTGGTGCGTGTGCTGTCTGTTTCGCGAGCAGAAAGCTCAGGAGGCGATGATAATGGCGAATGGAATGACGAAGATCTTGCTTCTGATGCAGAGCAATTGTTCGCCGGCGGTTCGTCAAATGTCAGCGGAATTGCTCAAGATTCTTCGTGTGAATTCCAAATACTGCCTTTCTTGCTACGATACAAAGACCACACATATCATgcccttttaa 1083 0.5088 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMDMEDGRRMDSLTGIVYFAEESEENREFLAKSDGFVPMLVGLLNDNVDSGVEFLEKVVSALDLILNKIENREQLKRSMLKSHDNCLDSLLLVLKQGSSTNSKIGSARILKFIAVDTESKIMIAEKDGVVSELLKSIAPEEDPALIENGLSCLAAISTPKRNKFKVVHLGAIKTLSRLLSGSNWSVSVTEKVLKLLETVSSTKEGRSEICEDPSCVAAILQKVLKVSSVATEHAVTILWCVCCLFREQKAQEAMIMANGMTKILLLMQSNCSPAVRQMSAELLKILRVNSKYCLSCYDTKTTHIMPF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3171 360 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 61 360 - -
Sto3g3171 360 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 56 - -
Sto3g3171 360 SUPERFAMILY ARM repeat 62 342 IPR016024 -
Sto3g3171 360 Pfam U-box domain 10 55 IPR003613 GO:0004842|GO:0016567
Sto3g3171 360 CDD RING-Ubox_PUB 14 56 IPR045210 -
Sto3g3171 360 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
Sto3g3171 360 Gene3D - 60 353 IPR011989 -
Sto3g3171 360 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 223 262 IPR000225 GO:0005515
Sto3g3171 360 PANTHER WDSAM1 PROTEIN 61 360 IPR045185 GO:0061630
Sto3g3171 360 PANTHER WDSAM1 PROTEIN 4 56 IPR045185 GO:0061630
Sto3g3171 360 SUPERFAMILY RING/U-box 5 55 - -
Sto3g3171 360 ProSiteProfiles U-box domain profile. 9 55 IPR003613 GO:0004842|GO:0016567
Sto3g3171 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 59 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3171 Sto-Chr3 36574690 36575940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3171 1 360 U-box Gene Family AT5G09800 49.635 4.37e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3171 - - jre:108987810 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3171 3 36574690 36575940 Sto3g3171 3 36574690 36575940 ECH
Sto3g3171 3 36574690 36575940 Sto4g0314 4 2423489 2424862 ECH