Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3165 ATGTATGCTTCTTCCTCTCCTCCTTCTCTACTCTTCCACTCAAGAAGATTACTTCTCCTTCACAATAACTCACCATCACCATCTTCTTCCCCAAACACTACTTCCACAGATTCCTCCTACCTAGGAGATGGCCTCAACTCCATCATAAGGTGTGCCTTGAGATGTTCAAATTTCGTCATCAATGACAATAATAGCCCTAACCCTaataaccctaaccctagagtGGCCAACACGGGAGTGAAGAAGAAGGCCTTGAAGACATTCCCAACGCTGGCATTCTCTCCCGAATTGTTGGCGAAACTCCAACCGGGGTTGGACTCGGAGTGCGCGATATGCCTCTCGGATTTCAACGCCGGCGACCGCCTGAGAATCCTCCCGAAGTGCAACCACGGCTTCCACGTCCGTTGCATCGACAAGTGGCTGAGCTCCCACTCTTCCTGCCCTAAGTGTAGGCACTGCCTCATTGAGACTTGTAATAAGATAGCCATGATCTCACCCTTAGAACCAGAAGGATTGATACGTAACTATAGGGGCATTTAG 540 0.4759 MYASSSPPSLLFHSRRLLLLHNNSPSPSSSPNTTSTDSSYLGDGLNSIIRCALRCSNFVINDNNSPNPNNPNPRVANTGVKKKALKTFPTLAFSPELLAKLQPGLDSECAICLSDFNAGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCNKIAMISPLEPEGLIRNYRGI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3165 179 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Sto3g3165 179 CDD RING-H2_PA-TM-RING 108 151 - -
Sto3g3165 179 PANTHER RING-H2 FINGER PROTEIN ATL78 44 170 - -
Sto3g3165 179 PANTHER RING-H2 FINGER PROTEIN ATL78 44 170 IPR044602 GO:0016567|GO:0016740
Sto3g3165 179 Pfam Ring finger domain 108 151 IPR001841 -
Sto3g3165 179 SUPERFAMILY RING/U-box 102 157 - -
Sto3g3165 179 SMART ring_2 109 150 IPR001841 -
Sto3g3165 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3165 Sto-Chr3 36491279 36491884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3165 10 155 C3H Transcription Factor Family AT1G20823 40.741 1.35e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3165 K19040 - gmx:100527126 188.348