Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3162 ATGGCTGATGGTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCCCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAAGATGCATATGTAGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTTACCTTGAAGTACCCCATTGAGCATGGTATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACCGAAGCTCCTCTCAACCCAAAGGCTAACAGGGAGAAGATGACCCAAATCATGTTCGAGACCTTCAATGTGCCTGCCATGTATGTTGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGTACAACTGGTATCGTTTTGGACTCCGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTTCCCCATGCCATCCTCCGTTTGGATCTTGCTGGCCGTGATCTAACTGATTCATTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACTACCTCTGCTGAGCGGGAAATTGTACGTGACATGAAGGAGAAGCTTGCATATGTTGCCTTGGACTATGAGCAAGAACTTGAGACTGCAAAGACCAGCTCTGCAGTTGAGAAAAACTACGAGCTTCCTGATGGACAAGTTATCACCATTGGAGCTGAAAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATCCATGAAACCACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTTTATGGCAACATTGTTCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCTGACCGGATGAGCAAGGAGATCACTGCTCTTGCCCCAAGCAGTATGAAAATTAAGATGGCCCGAACCAAGCAAACTGCTCGCAAATCCACCGGCGGCAAGGCCCCTCGCAAGCAGCTCGCCACCAAGGCCGCTCGGAAATCCGCTCCGGCCACCGGCGGCGTCAAGAAGCCTCACCGGTTCCGCCCCGGAACCGTGGCTCTGAGAGAGATCAGAAAGTACCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCGTTCCAACGCCTCGTTCGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCCGTGGCGGCTCTTCAGGAAGCTGCGGAAGCGTATTTGGTAGGTTTGTTCGAAGACACTAATCTGTGCGCTATTCATGCCAAGAGAGTTACCATTATGCCGAAGGATATTCAACTCGCCAGAAGAATTCGAGGCGAGAGAGCTTAG 1401 0.4975 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKTSSAVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3162 466 ProSitePatterns Histone H3 signature 2. 397 405 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 333 347 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 347 361 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 364 385 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 388 405 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 410 428 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 428 444 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 PRINTS Histone H3 signature 444 465 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 Gene3D Histone, subunit A 332 466 IPR009072 GO:0046982
Sto3g3162 466 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sto3g3162 466 MobiDBLite consensus disorder prediction 335 371 - -
Sto3g3162 466 Gene3D Actin; Chain A, domain 2 36 73 - -
Sto3g3162 466 PANTHER ACTIN 3 1 333 - -
Sto3g3162 466 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sto3g3162 466 SMART h35 364 466 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto3g3162 466 Gene3D - 153 320 - -
Sto3g3162 466 PANTHER ACTIN 1 333 IPR004000 -
Sto3g3162 466 Pfam Core histone H2A/H2B/H3/H4 331 462 IPR007125 GO:0003677
Sto3g3162 466 Gene3D - 4 152 - -
Sto3g3162 466 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sto3g3162 466 Gene3D Actin; Chain A, domain 4 184 270 - -
Sto3g3162 466 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sto3g3162 466 SUPERFAMILY Actin-like ATPase domain 149 333 IPR043129 -
Sto3g3162 466 Pfam Actin 5 340 IPR004000 -
Sto3g3162 466 SUPERFAMILY Histone-fold 332 463 IPR009072 GO:0046982
Sto3g3162 466 SMART actin_3 7 448 IPR004000 -
Sto3g3162 466 ProSitePatterns Histone H3 signature 1. 345 351 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3162 Sto-Chr3 36461494 36466106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3162 1 331 Cytoskeleton Gene Families AT5G09810 97.885 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3162 K10355 - gmx:100789000 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3162 3 36461494 36466106 Sto3g3162 3 36461494 36466106 ECH