Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3153 ATGAGCAGAATCCTCTTCTCGAAGAATCTATTCATTTTCTCGgcttcttttgcttcttcttcatcatcaattcGTCCGCTTCTTCTTCAGTTTTCTCACTTCGCAACCTCATCCAATTACCCTTCGTCGAGGATACGCCATGAGGAGGAATCTCGGAAAGTGCGGGTTTCAGTATGGTGGGATTTCGAGAGCTGCAATTTACCTGCTGATGCAAATATTTACAGAATTTCTCACTGCGTTACTGAGGCTGTCAGGGCCAACGGCATAAAGGGGCCTATTCAAATTACGGCTTTCGGTGATGTTTTCTTCCTCACAAGGGCGAAACAGGAGGCTCTCTCTTCAACTGGGATTATTCTCAACCACATTCCCACTGATGGAAAAAGCAGTGCTGATAAATCCCTTCTTGTTGACCTTATGTACTGGGTTTCACAAAATCCTCCACCAGCACATTTGTTTCTGATCTCGGGGGATAGGGATTTTGCTGGAGTATTACATCGTTTAAGGATGAATAACTATAATATATTGCTTGCAACTCCAGAAATGCCTTCCAATGTTCTCTGTAGTGCGGCAACTATAGTGTGGCACTGGAATTCATTGCTTAAAGGAGAAAATCTTTCTGGAAAACACTTCAACCATCCTCCTGATGGTCCTTTTGCTTCTTGGTATGGGCACCACAAGGTACCTCTCGAAGACCCCTTCTCAAATGGTGAGCAATCTACATGTTTACAAACTGAGGAGATCTCTGAGTTACGTCCAATCCCAAGTTATATTTCAAGGAAAATTCGTCGTATATTGTATTCATATCCAAGAGGCATCTCTATAACTGATCTTCAAGCAGAGTTGGATAAAGCAGAAATTCAATTGGATAAAGACTACTATGGACATAAAAAGTTTTCCCGCTTTCTCTTTTCAGTGGGACATATAAAGCTTCATTTGGGACCTGGTGGACAACTTTTCGTAGTACCCCAAAAAATTCCTGAATCTATTAATAGAGGAAGACCTGTACCTTCAACAACATCTTTTGATAATGAGGATTTGAACTTTGTGGCTACTTCTAAGTTAAGTGGTGAGGGGGGAAATATGGTTAAGGATGAAGCTGGAACACCACGAATGGCCTTATCTCATGAATTTGGTGTAGAAGATGTTCCAGAAAAGGCCCATCAGGTTGTGAATGTGGTTAATGCTCAAGTGACTGAGAATCAATTTCCCCCTAAGGAGAATGAAATTCTTAGCTCTAGTGATGTGCTAATGGAAAAGAATGGTATTAGGAATGAAAGCTTCGTAAAGTTAAAAGCTGAGGACGAATATGCTAAACCAACAATAAAGGAGGCTGATGCAGGTTGTCACACACCTTGTTCTTCACCAGTTGATGAATCTATGATTGACAAACCAACTGGTGGAAGTACTGAAACTTGCAGCAATAAATTTGACAGACGTCTATCTTTCTTTGGTTGGATTAAAAGTTGGTGGCAATTCTGGAGAAGTGATGAAAACTCCAGTTATTTGATTGCTCGTCAGAACAAGATTGCTAGTAATAATGGAGACCCTGAGTTACTGAAACCGAACTTGACACTTGATAATTCTGATGAGCCAAGAGATATAAAACAGACATCTAGTCATTCTTATGAACCAAGAGATTTAAAACGGACGGCTAGTCATTCTGAAGAGCCAAGAGATATGGAACAGACACCTAGTCATTCCAAGGAGCCTGAATTATCAATTCTGAAACAGGAAGTTACTCCTGCTGAAGAGCAGGAGTTATCAGAATCGAAGCAGACAGTGAACTGTTCTGGAGAAGCTGAGTTATTTTCTAGTAGTTCATTTTGGAGTGACATGGAATCTTTTATTTTCACCTCCAAAGGATCAATTCTTGTCTCCAAGTCAAGAAGCAGGGAGAATATGATGCAAAATTTTCAAAAGTTTGGACCCATGATTCTAAGATCTCTTAGTGAAGATGATCTCCTTCAATTAGTGGATTTGTTAATATCAGAGAAAAAGTGGTTGGAGGAAAGGCCTTCTCAGACTTTTCCTTTCCGGCTCACTCCACCAGATGGAAAGAGTTCAGGAGACCTACCTCATGGCGCAAATGGTTTGAGCTCTATTTTCCTAAGCAGAACAACACAGGGTGACTTGCAGAAATCTTCAGAAGGTGATTCGAATAAAAAATGTCAGAGTATATCTCACTCTGGAGTTTCTTCACCTTCCAATGGAAGGAAGCATACTGAGAGGAGGTCTAGAACTGACATCTTAGCAGATACTAAGAAACTTGTGAGTGCGACGTTGAGGGCATACCCGAGCGGGATTAATATGGGTATTATCCCAGACCTTTTTCTTGAGAGGTATGGCTATCCTCTTGATTTAAAGAAGCTTGGTCATTCTAAGTTGGCATCTTTATTACAGACTTTGCCTGGAGTGAAAGTGGCGTACTGTCATATCTTTCCTGCTGATCGTGCCATTATTAGGGCTTCTGGCCCGGAAACCACAATTCTCAATACTCAAGAGACCAATTCAAGTGATGCAGTATTCTCTTCAGATGATGAGTTGTCTGATTCATACACCAAAGACGAGAGCAAGGACTCTCCATTGGAGGAATTCGGACCAGTTTCTGTCAGAAATTCTAACTAG 2625 0.4065 MSRILFSKNLFIFSASFASSSSSIRPLLLQFSHFATSSNYPSSRIRHEEESRKVRVSVWWDFESCNLPADANIYRISHCVTEAVRANGIKGPIQITAFGDVFFLTRAKQEALSSTGIILNHIPTDGKSSADKSLLVDLMYWVSQNPPPAHLFLISGDRDFAGVLHRLRMNNYNILLATPEMPSNVLCSAATIVWHWNSLLKGENLSGKHFNHPPDGPFASWYGHHKVPLEDPFSNGEQSTCLQTEEISELRPIPSYISRKIRRILYSYPRGISITDLQAELDKAEIQLDKDYYGHKKFSRFLFSVGHIKLHLGPGGQLFVVPQKIPESINRGRPVPSTTSFDNEDLNFVATSKLSGEGGNMVKDEAGTPRMALSHEFGVEDVPEKAHQVVNVVNAQVTENQFPPKENEILSSSDVLMEKNGIRNESFVKLKAEDEYAKPTIKEADAGCHTPCSSPVDESMIDKPTGGSTETCSNKFDRRLSFFGWIKSWWQFWRSDENSSYLIARQNKIASNNGDPELLKPNLTLDNSDEPRDIKQTSSHSYEPRDLKRTASHSEEPRDMEQTPSHSKEPELSILKQEVTPAEEQELSESKQTVNCSGEAELFSSSSFWSDMESFIFTSKGSILVSKSRSRENMMQNFQKFGPMILRSLSEDDLLQLVDLLISEKKWLEERPSQTFPFRLTPPDGKSSGDLPHGANGLSSIFLSRTTQGDLQKSSEGDSNKKCQSISHSGVSSPSNGRKHTERRSRTDILADTKKLVSATLRAYPSGINMGIIPDLFLERYGYPLDLKKLGHSKLASLLQTLPGVKVAYCHIFPADRAIIRASGPETTILNTQETNSSDAVFSSDDELSDSYTKDESKDSPLEEFGPVSVRNSN 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3153 874 CDD LOTUS 761 808 - -
Sto3g3153 874 MobiDBLite consensus disorder prediction 830 847 - -
Sto3g3153 874 MobiDBLite consensus disorder prediction 709 736 - -
Sto3g3153 874 MobiDBLite consensus disorder prediction 830 874 - -
Sto3g3153 874 MobiDBLite consensus disorder prediction 511 572 - -
Sto3g3153 874 Pfam OST-HTH Associated domain 628 677 IPR025677 -
Sto3g3153 874 MobiDBLite consensus disorder prediction 848 862 - -
Sto3g3153 874 PANTHER LIMKAIN B LKAP 16 872 IPR024768 GO:0005777|GO:0010468|GO:1903231
Sto3g3153 874 Pfam OST-HTH/LOTUS domain 752 808 IPR025605 -
Sto3g3153 874 Pfam OST-HTH/LOTUS domain 256 318 IPR025605 -
Sto3g3153 874 ProSiteProfiles OST-type HTH domain profile. 749 824 IPR025605 -
Sto3g3153 874 CDD PIN_limkain_b1_N_like 55 179 - -
Sto3g3153 874 Gene3D - 48 198 - -
Sto3g3153 874 Gene3D - 750 811 IPR041966 -
Sto3g3153 874 MobiDBLite consensus disorder prediction 526 566 - -
Sto3g3153 874 MobiDBLite consensus disorder prediction 709 749 - -
Sto3g3153 874 PANTHER EMB|CAB71880.1 16 872 - -
Sto3g3153 874 Pfam NYN domain 55 191 IPR021139 GO:0004540
Sto3g3153 874 ProSiteProfiles OST-type HTH domain profile. 253 324 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3153 Sto-Chr3 36395897 36398927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3153 53 202 C2H2 Transcription Factor Family AT5G61190 46.667 7.04e-38 151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3153 3 36395897 36398927 Sto3g3153 3 36395897 36398927 ECH