Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3151 ATGGATTTGGACGATTTCCGATCGATATTGGAGACTGCAGGTGTGGATGTATGGATGTTCATCGACACCGCAATCGACGTGGCGTCCATGGATTACGGCAAGGAGTTGAAGCATCGAAGGGATGGAATCGTTCAGCGTCTGTATGGAGCCACTTCTGATCCTCCTGCACGGTGTCGGAATTGCGACGGAACAAGCGCTCCGATCAAGAAACAGAGCACTCCTGAATTGAAATTGGGCGCGTCGCCTGCAACGCCTCACTCTATTGGTCAAGACGACGACGATTTGGATCCTTACGGTGGCCTTCTTGATGATGAACAGAGGAAGATTCATGAGATCAAAGAGCAACTTGAAGATCCTGATCAGTCCGAAGATTCTAAGGTTGAATTGCTACAAAATCTCGCAGACATGGATATTACATTCCAGGCGCTAAAGGAAACTAACATTGGGTGGCACGTGAATCGATTGCGCAAGCATTCGTCCAATGATGTTAAGAGATTAGTGAAGCTACTTGTCAGAACTAATCTGTTCCTTAACAGGAAATGGAAGGAGATTGTAGATGAGTGGGTGAAGATCAATCCACCAGGAGATCACGCTTCTATCATGGCTGATGGAGACTCGCCTCAGCAGAAAAACCCCCAAAATGGGCATCATCAGATTCCTGATTTTGCATACTCGCCTAATCCACACAATGGGAGTTCTGGATCAGAGAGGAACTATTCAGAATtagaaccaaaacaaaaaacagttCCTCCTCGAAAGCAGCTGGCAACACCAAAACCAGCGACCCCAGTTCCTATTCCTGCTTCTGCTCCTCAAAACAGAGGCTTGCTTCAGCAAGAAGACGGCTTCAAGAAAACTACAAAGAAGCTGAAAATGGTTGAATTACCTTACCCTTCCTAA 900 0.4567 MDLDDFRSILETAGVDVWMFIDTAIDVASMDYGKELKHRRDGIVQRLYGATSDPPARCRNCDGTSAPIKKQSTPELKLGASPATPHSIGQDDDDLDPYGGLLDDEQRKIHEIKEQLEDPDQSEDSKVELLQNLADMDITFQALKETNIGWHVNRLRKHSSNDVKRLVKLLVRTNLFLNRKWKEIVDEWVKINPPGDHASIMADGDSPQQKNPQNGHHQIPDFAYSPNPHNGSSGSERNYSELEPKQKTVPPRKQLATPKPATPVPIPASAPQNRGLLQQEDGFKKTTKKLKMVELPYPS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3151 299 MobiDBLite consensus disorder prediction 196 299 - -
Sto3g3151 299 CDD TFIIS_I 112 186 - -
Sto3g3151 299 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 283 IPR044790 -
Sto3g3151 299 MobiDBLite consensus disorder prediction 204 239 - -
Sto3g3151 299 ProSiteProfiles TFIIS N-terminal domain profile. 107 188 IPR017923 -
Sto3g3151 299 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 283 - -
Sto3g3151 299 SMART TFS2_5 109 187 IPR003617 GO:0005634
Sto3g3151 299 Pfam TFIIS helical bundle-like domain 129 188 IPR017923 -
Sto3g3151 299 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 103 195 IPR035441 -
Sto3g3151 299 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 107 196 IPR035441 -
Sto3g3151 299 MobiDBLite consensus disorder prediction 54 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3151 Sto-Chr3 36384886 36386674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sto3g3151 Med26 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3151 - - jre:108994265 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3151 3 36384886 36386674 Sto3g3151 3 36384886 36386674 ECH
Sto3g3151 3 36384886 36386674 Sto4g0327 4 2557606 2559562 ECH