Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3149 ATGGATCCTTTCGATGAAAACGTCGTTTCATGTTGGTCTGGATGCAAAACGTATCCATTGGATTCTGTAATTGTTGATAATAACCTGAATTCTGTGTCAAAATTAGAGTCTTCTTCATCAGATCAGTACTTCAATATTAAAGTTGAATGCAAAAATTGGTGTGTCTCAAACCTAAAGATTAGTTACTATAATTCAATTGGGCAAGTTTTCTCAAATATCCCAAAGCAACAAATTGAACAACAAATCGATGccattctttcttctttcaatGTTCGTTCAGAAGCCCGCGAATTTGCGAAACAAAGTATCTTGTCGTGTGCAGAGAAGATGGTTAATGTTACACACAAGGACGACAAGATTTTGTGTATGCGTGTGGTTATGATATCGCGAATTTGGATGGATTTTGATAGTGTAGTGGATTTTCAGTTTGATCCCGATGAGGATGATTCTGACAGTGATGAAgacgaagatgaagatgaagatgaagacgaGAATAATGCGGGCGACTATTATGATGTTGAGGATGAAATTGTAGATGGAGACGAGTATAATGAGTATAGcaattatgatgatgatgggtTTGGATGGGTGCCTGCAAGGATTTCGTGTATTGAAGAATTGGAGATAGTGAAGATTGAAGAACAAGAAAGAATTTTAGATGGTTGTGCAATTTGTTTCGAAGATTTTACGATTGATTTAGAAGTTGTTCGAATCTCCAGAAAATCATCTGAAAGGCAAGGGTTTCAGTTTGAATCTTCAAAAGAGATTCAAGTTCAACATGATATCAGAGCCGAGAAAGCCGGTGGGCCAAATGGGCCAGCTCTGAGGGCTTTGGCCCATATAAGAGTGTCAACAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTATTGTGGTTATGGTGATTCCTGTAAGTTTATGCATTATCGAGGTGATGATTATAAGTCTGGATGGCAATTGGAGAAAGAATGGGATGAAGCAGAGAAAGCGAGGAGGATGAGATTTGCTGCAGAAGAACCATCTGCCACCATCAACAGAAATAGAGCTCAACAGAAAAAGAGAACTCAGCCACCATCAACCAACAGAGAAAAACAAGGCAAAAGAACAATGCGAGACAAACGGGACTCACCGCCCTCACGGCGATTCACCTCCGATGACTCCGATAGTGACAGTGGGCGGCCAAGATTGACGGAGAACGCTCTTGAATACTCAAGCTCCCTTCACTCGATTCTCTGCTTCGATTTGCGAGGAGGAACGTGCACGCAAGTATTCTCCCGAAACGGTGATGATTCCGGTGTTCACGACGTCACCGGCCGGCGAGCGGCACGGTGGTACGGACGGCGGCCTCCCTTGCTCTCTCGcccctcactcactcactcaaaTTCTGCGGGGTCTTTAGAGAAATAG 1422 0.3994 MDPFDENVVSCWSGCKTYPLDSVIVDNNLNSVSKLESSSSDQYFNIKVECKNWCVSNLKISYYNSIGQVFSNIPKQQIEQQIDAILSSFNVRSEAREFAKQSILSCAEKMVNVTHKDDKILCMRVVMISRIWMDFDSVVDFQFDPDEDDSDSDEDEDEDEDEDENNAGDYYDVEDEIVDGDEYNEYSNYDDDGFGWVPARISCIEELEIVKIEEQERILDGCAICFEDFTIDLEVVRISRKSSERQGFQFESSKEIQVQHDIRAEKAGGPNGPALRALAHIRVSTRFDYQPDICKDYKETGYCGYGDSCKFMHYRGDDYKSGWQLEKEWDEAEKARRMRFAAEEPSATINRNRAQQKKRTQPPSTNREKQGKRTMRDKRDSPPSRRFTSDDSDSDSGRPRLTENALEYSSSLHSILCFDLRGGTCTQVFSRNGDDSGVHDVTGRRAARWYGRRPPLLSRPSLTHSNSAGSLEK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3149 473 MobiDBLite consensus disorder prediction 459 473 - -
Sto3g3149 473 PANTHER ZINC FINGER PROTEIN 183 263 344 IPR039971 -
Sto3g3149 473 SUPERFAMILY CCCH zinc finger 286 317 IPR036855 GO:0046872
Sto3g3149 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 263 344 - -
Sto3g3149 473 MobiDBLite consensus disorder prediction 143 172 - -
Sto3g3149 473 MobiDBLite consensus disorder prediction 337 401 - -
Sto3g3149 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 313 IPR000571 GO:0046872
Sto3g3149 473 MobiDBLite consensus disorder prediction 362 400 - -
Sto3g3149 473 SMART c3hfinal6 288 315 IPR000571 GO:0046872
Sto3g3149 473 Gene3D - 284 317 - -
Sto3g3149 473 ProSiteProfiles Zinc finger C3H1-type profile. 288 316 IPR000571 GO:0046872
Sto3g3149 473 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3149 Sto-Chr3 36359323 36363659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3149 262 337 C2H2 Transcription Factor Family AT1G01350 80.263 2.19e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto3g3149 zf-CCCH 6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3149 K13127 - psom:113341605 147.132