Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3146 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACTGTGGAGGAGCAGGAAGATCGAGATTCGAGGAAGAAGGACAAGGAGAGGAGCGACAAGAGTGAGCGGAGTTACAGGAAGCGTGAAGTCGACGACGATGTTGATGGTGAAGACAAGAGGAGCAAGAAGTCCAGAGGCGACGACGAGAATGGGTCGAGGAAGGATCGTGATGAGCGCGAGAGAGAACGTGCCTTGAAGGCTTGGCTAATCAAAGCATATCCTTATGGAATGAGTTTCTTCACCCTTCCTGCCATCCATGTTATTTTTTCACAGACCTATCATACATTCTCTTCACCTGCTTTGGTATGTCTAACTCAGTTATTTGATAATGTAGTGCAGTTTTGTCCCATGAGGAGATTTAGGGACAAGAAAGAGACCGTGGAACCTGAGGCTGATCCAGAAAGAGATCAGAGGACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACGGAGAGAGATGTTTATGAGTTTTTCTCAAAAGCTGGCaagGTGAGGGATGTCCGCCTGATCATGGATAGGAACTCAAGACGGTCTAAAGGAGTTGGTCAATTCATGCTGCGTGCACAAGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCTCTACATCTCTTTGCTGtatattgaattttatgatGCAATGTCAGTGCCGATGGCAATTGCTCTTTCTGGACAACTGCTTTTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAAAACCTTGTTCAGTCTACTACTTCCACTGGAGGTGCAGGTGTAGCAGGACCATATGGAGCAGTGGACAGGAAACTCTATGTGGGAAACCTTCACTTCAACATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGGTTGTTCAGCTGCCCCTTGACATGGAGACAGGACAAtgcaagggttttgggtttgttcaATTTGCCAATCTTGAACATGCTAAGGCAGCTCAGAGTTTAAATGGAAAATTGGATATTGCTGGTCGGACTATTAAGGTTTCATCTGTAACAGATCATGTTGTAGGCCAAGACACCAGTGCAAAATCTGCTGACTTTGATGACGATGAAGGTGGATTGTCCTTAAATGCTCAATCAAGAGCAATGCTTATGGCAAAACTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCAATTGGTGGTGTGCCTATTGTAAATGGCTCAGCCCCTACCCAGTCAGCTATTAGTCTGCCTACTGGAGGTCCTGGTATAGTACCTGGATCAGCTGTCCCAACACCCATTATGCCTACCCCTGTAGGAGAGCCAGTTGGAAGCCCCAGTGAGTGTTTGCTATTGAAGAATATGTTTGATCCCAGTACTGAGACGGAACCTGATTTTGATGAAGATATTAAGGAGGATGTAGAAGAAGAATGCTCTAAATTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATCTTCGGTTTGAAACAGTGCAAGCAGCTAGTGCTGCTCAACAGTCAATGCACATGAGGTGGTTTGCACGCAGGTTGATTTCAGCAATTTTCATGATGGATAGATATCAGAGGGTGGAGAAGCCCAAGGCAGATACTCCTATAAACGAGAATGAGATTCGAATTACTACTCAGGGCAGGATGAGGAATTATATCACCTATGCTACCACTCTTCTCCAGGAGAAAGGATCTGATGAAATTGTTCTAAAGGCAATGGGAAGAGCTATCAACAAGACTGTTATGATCACAGAACTGATCAAGCGAAGGATTGTTGGTCTGCACCAAAACACTTCAATTGGATCAACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACACGCCATGTTTCAATGATCACAATTACTTTGTCAAAGAAAAAGCTGGATACATCCTCCGTTGGGACTAGATGGAATGTGATTCtggatggggatagtatgggatgcaAGCCAAGATACCAACCTCCACTCCCAGCTGATCAAGTAAAGCCCTTAAATGAATATGAAGAGGAAGGAGGTAATTACAATGGAAGCATGGAATACTATGGAGATGGTTATGATGGGGGACGTGGCTATGGTGGCTTTGGTGGCAGAGGACGTGGCCGTGCACGGGGTCGTGGTTTTTCAGGAGGGCGAGGACGAGGCTATGGTGTTCAGTCAGCTGGGTACTATGATTATGTTGAATATGATGCACCACCTGCCGCACGGGGCCGTGGTCGTGGAAGGGGAAGGGGCCGTGGACGCGGTCGTAATGTTAGATTAGACGGAGGTGGCCGAGGTGTTGCTGTTTGA 2367 0.447 MDFDEYDYLEKTVEEQEDRDSRKKDKERSDKSERSYRKREVDDDVDGEDKRSKKSRGDDENGSRKDRDERERERALKAWLIKAYPYGMSFFTLPAIHVIFSQTYHTFSSPALVCLTQLFDNVVQFCPMRRFRDKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGQFMLRAQDTSKETQLELSALEFLFLYISLLYIEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSTTSTGGAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGQCKGFGFVQFANLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVVGQDTSAKSADFDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSIGGVPIVNGSAPTQSAISLPTGGPGIVPGSAVPTPIMPTPVGEPVGSPSECLLLKNMFDPSTETEPDFDEDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVQAASAAQQSMHMRWFARRLISAIFMMDRYQRVEKPKADTPINENEIRITTQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKTVMITELIKRRIVGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKKLDTSSVGTRWNVILDGDSMGCKPRYQPPLPADQVKPLNEYEEEGGNYNGSMEYYGDGYDGGRGYGGFGGRGRGRARGRGFSGGRGRGYGVQSAGYYDYVEYDAPPAARGRGRGRGRGRGRGRNVRLDGGGRGVAV 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3146 788 CDD RRM3_RBM39_like 455 537 - -
Sto3g3146 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 479 532 IPR000504 GO:0003723
Sto3g3146 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 193 IPR000504 GO:0003723
Sto3g3146 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 353 IPR000504 GO:0003723
Sto3g3146 788 CDD RRM1_RBM39_like 150 252 - -
Sto3g3146 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Sto3g3146 788 MobiDBLite consensus disorder prediction 1 69 - -
Sto3g3146 788 Gene3D - 452 552 IPR012677 -
Sto3g3146 788 Pfam Alba 556 620 IPR002775 GO:0003676
Sto3g3146 788 TIGRFAM SF-CC1: splicing factor, CC1-like family 224 540 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sto3g3146 788 CDD RRM2_RBM23_RBM39 283 355 - -
Sto3g3146 788 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 374 474 IPR029123 -
Sto3g3146 788 Gene3D - 277 372 IPR012677 -
Sto3g3146 788 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 224 540 - -
Sto3g3146 788 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 128 194 - -
Sto3g3146 788 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 74 - -
Sto3g3146 788 MobiDBLite consensus disorder prediction 759 788 - -
Sto3g3146 788 Gene3D - 127 265 IPR012677 -
Sto3g3146 788 SUPERFAMILY RNA-binding domain, RBD 452 535 IPR035979 GO:0003676
Sto3g3146 788 SUPERFAMILY RNA-binding domain, RBD 142 258 IPR035979 GO:0003676
Sto3g3146 788 PANTHER CC1-LIKE SPLICING FACTOR 1 74 - -
Sto3g3146 788 PANTHER CC1-LIKE SPLICING FACTOR 128 194 - -
Sto3g3146 788 PANTHER CC1-LIKE SPLICING FACTOR 224 540 - -
Sto3g3146 788 SUPERFAMILY RNA-binding domain, RBD 280 358 IPR035979 GO:0003676
Sto3g3146 788 MobiDBLite consensus disorder prediction 12 69 - -
Sto3g3146 788 Gene3D - 553 655 IPR036882 GO:0003676
Sto3g3146 788 SMART rrm1_1 457 534 IPR000504 GO:0003723
Sto3g3146 788 SMART rrm1_1 150 252 IPR000504 GO:0003723
Sto3g3146 788 SMART rrm1_1 282 355 IPR000504 GO:0003723
Sto3g3146 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 256 IPR000504 GO:0003723
Sto3g3146 788 SUPERFAMILY AlbA-like 553 652 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3146 Sto-Chr3 36312630 36327324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3146 261 354 Eukaryotic Initiation Factors Gene Family AT4G34110 37.895 1.79e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3146 K13091 - gmx:100802446 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3146 3 36312630 36327324 Sto3g3146 3 36312630 36327324 ECH
Sto3g3146 3 36312630 36327324 Sto4g0333 4 2613880 2615193 ECH