Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3144 ATGTGTTTTAAGGTGGCGAATCCTCACGAGAGCAACGTCCATGGACGGAGAAATAGCGACGCCTTAGTTTCGTCGTCAATGCCAATGGTGTTTCCCGGCGTGAATAGGGACTCTGAGATGTCCGCTATGGTCTCTGCTCTGACGCACGTGGTCGCCGGCGACGTTCCTGATGGCGGCGGTGGCGGTGCTGTTGCGGTAACAAACTCCTCGCCGCCGCCGTCCGATTCGGCGACGACGCCGTCTCCGTCTTCGTCGCCTTATGGCGGAAACTCTGCCTTGAAACGATCCTTTGGTGATATTTCCCGTGGCGGTTCTTCTTCTGCTGCTGCTATTATGCAAACAATTCCAGAAGGTTCTAGAGCAGAAATACGAGAAATAGGAAACAACAATGCAGTATATGAATACAGTAATAACAATACTAATATAGACACTACTTCAAGAGAAGGAGCAAGAAGAAAATACAGAGGCGTACGGCAGAGGCCTTGGGGCAAATGGGCAGCGGAAATTAGAGACCCTTTCAAAGCTGCCCGCGTTTGGTTGGGCACCTTCGATACCGCCGAAGCTGCTGCCCGAGCCTACGACGAGGCTGCCCTCCGCTTCCGAGGCAACAAGGCCAAGCTCAATTTCCCCGAGAACGTCCGCCTCCGCCTCCCTCCGCCCACTCCTCCGCCGCCGACGACGACGATTCCGGCCTCCACGGAGCCGATTGTTCATACGCAGACGGAATCTCttactcctcctcctcctcctccggtGCTTCACAGTGCTTTTAGCGATTTCTATGGCTATTCGCAATTCTCGGAATTTCCGCCGATGGATTTGTATGATCAGATGATTGTATCGTCGTCGTCTTCAATGCCTTATCATCATCTTCAATCGTCGCCGTCGTCGGTTTCTTCTACGCAGGCAGATCTGCTTTATTCGGGTCGGGGCACGCAGGTCTCGGGTCAGGGAAGCGGGTCCGAATACGGGCCTTCATCGTGGTCAGCGTCGGGTCATAGTTCATCTTCTTCTGGATCATGA 1023 0.5249 MCFKVANPHESNVHGRRNSDALVSSSMPMVFPGVNRDSEMSAMVSALTHVVAGDVPDGGGGGAVAVTNSSPPPSDSATTPSPSSSPYGGNSALKRSFGDISRGGSSSAAAIMQTIPEGSRAEIREIGNNNAVYEYSNNNTNIDTTSREGARRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLRLPPPTPPPPTTTIPASTEPIVHTQTESLTPPPPPPVLHSAFSDFYGYSQFSEFPPMDLYDQMIVSSSSSMPYHHLQSSPSSVSSTQADLLYSGRGTQVSGQGSGSEYGPSSWSASGHSSSSSGS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3144 340 MobiDBLite consensus disorder prediction 215 230 - -
Sto3g3144 340 Gene3D AP2/ERF domain 152 212 IPR036955 GO:0003700|GO:0006355
Sto3g3144 340 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Sto3g3144 340 PRINTS Ethylene responsive element binding protein signature 176 192 IPR001471 GO:0003700|GO:0006355
Sto3g3144 340 MobiDBLite consensus disorder prediction 1 20 - -
Sto3g3144 340 PANTHER DNA-BINDING DOMAIN 37 338 IPR044808 GO:0003700|GO:0009873
Sto3g3144 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 37 338 - -
Sto3g3144 340 MobiDBLite consensus disorder prediction 67 91 - -
Sto3g3144 340 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Sto3g3144 340 Pfam AP2 domain 153 202 IPR001471 GO:0003700|GO:0006355
Sto3g3144 340 MobiDBLite consensus disorder prediction 58 101 - -
Sto3g3144 340 ProSiteProfiles AP2/ERF domain profile. 153 210 IPR001471 GO:0003700|GO:0006355
Sto3g3144 340 MobiDBLite consensus disorder prediction 286 340 - -
Sto3g3144 340 CDD AP2 153 212 IPR001471 GO:0003700|GO:0006355
Sto3g3144 340 MobiDBLite consensus disorder prediction 213 232 - -
Sto3g3144 340 SMART rav1_2 153 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3144 Sto-Chr3 36289181 36291384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3144 151 215 AP2-EREBP Transcription Factor Family AT5G61890 84.615 7.43e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto3g3144 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3144 - - mtr:MTR_3g095190 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3144 3 36289181 36291384 Sto3g3144 3 36289181 36291384 ECH
Sto3g3144 3 36289181 36291384 Sto4g0337 4 2651529 2653279 ECH