Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3098 ATGAATTCTCCATCCACACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCAATCCACCAGATTAATATGTGGGGAGAAAATTTCAAAAGTAATGGTAATTTAAGTGCCTTAATTGGTGAGGCAGATATGAAGTTAGATCTTCAGCCAGAGGATGCTTCTCATGGAACAGTGGGAACGTCTAAGATGTATGACCAAGAAGCTAATAAACCTACTGATAAGGTGAGAGCATCCCCGAGGCCCCCAgcaattgaaaagaataaagatTATGTTTCTCTGAATAGTTGGCATTTTGAACTATTATCTATCCTGAATATTTCCAGGAAATGTAATGTTCAGTTCAAATTGTGTCTAAATGCTAATGTGgatattttgtttcttatctTTATACAAAGGCGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTACGGAAAAAGGCTTATGTGCAACAGCTAGAATCAAGTCGTTTGAAGCTGATCCAATTAGAGCAAGAGCTTGACCATGCAAGACAACAGGGTTTATATATGAGTGGTGGATTGGATTCTAATCATCTGGGTTTTCCCGGAACTGTAAATTCAGGCATTACAACCTTTGAAATGGAGTACGGACACTGGATTGAAGAGCACAATAGACAAATCTGTGAACTGAGAGGTGCTTTAAATGCTCATATTGGTGACATGGAGCTAAGGATTCTTGTTGATAATATAATGAGTCACTATTTTGAACTATTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTGATGTTTGGTATGTGGAAGACAACAGCTGAACGGTTTTTCTTGTGGATTGGAGGCTTTCGTCCTTCTGAGCTTCTAAAGGTTATTGTCCCTATGATTGAACCCTTGACAGAGCAACAACGGTTGGATGTATCTAACCTTGGACAATCCTGTCAGCAAGCAGAAGATGCCCTTTCTCAAGGTATGGATAAACTCCAGCAAACACTTGCTGAAACTGTAGCAGATGGACAACTAGTTGAAGGAACTTATATTCCTCAGATGGCTACTGCAATGGAGAAAATGGAAGCTCTTGTGAGCTTTGTAAACCAGGCTGATCATCTTCGGCAGGAAACCTTACAGCAAATGTTTCGGATCCTTACAATTCGTCAGGCTGCTCGATACCTGCTTGCTCAGGGAGAATATTCCCAACGTTTGCGAGCCTTGAGCTCGCTTTGGGCGAATCGTCCTCGTGAACCAGCTTAG 1245 0.4064 MNSPSTQFVSSRRMGVYDPIHQINMWGENFKSNGNLSALIGEADMKLDLQPEDASHGTVGTSKMYDQEANKPTDKVRASPRPPAIEKNKDYVSLNSWHFELLSILNISRKCNVQFKLCLNANVDILFLIFIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEQELDHARQQGLYMSGGLDSNHLGFPGTVNSGITTFEMEYGHWIEEHNRQICELRGALNAHIGDMELRILVDNIMSHYFELFRMKSAAAKADVFYVMFGMWKTTAERFFLWIGGFRPSELLKVIVPMIEPLTEQQRLDVSNLGQSCQQAEDALSQGMDKLQQTLAETVADGQLVEGTYIPQMATAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLAQGEYSQRLRALSSLWANRPREPA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3098 414 MobiDBLite consensus disorder prediction 68 84 - -
Sto3g3098 414 Coils Coil 149 176 - -
Sto3g3098 414 SUPERFAMILY Leucine zipper domain 131 169 IPR046347 GO:0003700|GO:0006355
Sto3g3098 414 PANTHER TRANSCRIPTION FACTOR TGA9 1 413 - -
Sto3g3098 414 MobiDBLite consensus disorder prediction 65 84 - -
Sto3g3098 414 ProSiteProfiles DOG1 domain profile. 199 409 IPR025422 GO:0006351|GO:0043565
Sto3g3098 414 SMART brlzneu 126 186 IPR004827 GO:0003700|GO:0006355
Sto3g3098 414 Pfam Seed dormancy control 216 291 IPR025422 GO:0006351|GO:0043565
Sto3g3098 414 Pfam bZIP transcription factor 132 159 IPR004827 GO:0003700|GO:0006355
Sto3g3098 414 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 413 - -
Sto3g3098 414 CDD bZIP_HBP1b-like 133 182 - -
Sto3g3098 414 Gene3D - 131 179 - -
Sto3g3098 414 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 133 148 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3098 Sto-Chr3 35761731 35766058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3098 1 414 Calmodulin-binding Proteins AT5G65210 60.808 2.02e-175 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto3g3098 DOG1 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3098 K14431 - gmx:100793353 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3098 3 35761731 35766058 Sto3g3098 3 35761731 35766058 CCT
Sto3g3098 3 35761731 35766058 Sto3g3098 3 35761731 35766058 ECH
Sto3g3098 3 35761731 35766058 Sto4g0378 4 2940906 2944544 ECH