Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3096 ATGGCGGATCACTCAGACCCTTTGCCTCTAATCCCTCCACCACTCATCACTGAACCTAGCGAGATCGACCTGGAAGCCGGTCCCAGCGAACAAATTCAATGCCGGATTTGTCTCGAAACTgatgGTAGAGACTTCATAGCTCCTTGTAAGTGCAAAGGAACATCAAAATATGTACATAGAGAATGTCTGGATCATTGGCGAGCCATTAAGGAAGGGTTTGCATTTGCTCACTGCACAACCTGCAAGGCTCCTTATTATTTGCGCGTTCATGTTGCTGCTGATAGGAAATGGCGAACCTTGAAATTTCGGTTCTTTGTCACAAGAGACATTTTGTTTATATTTCTGACTGTCCAGCTTGTCATTGCTTCTCTGGCTTATCTGATTTATCTAATGGATGGTTACCAGCAACACTGGCTTCGTcttgtttggggttttgatagTGAGCTTAGCTTTTACTACATATGTGGGGCTTTATTGTTTTTTGCATTGCTTGGCCTCTCTGGCTGCTTCATTACTTGTTATGATCGTAGAGTTCGCAATGATTTGGCTCAGCCTTGTCGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTCTGTGCAGACTGTCATTTGCCAGGAACTCTCTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGCTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTGTTTATAATGGCTTTGATTGTTCTAGGACTCTTTACTGTAATCGGGATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAACGAATCTGGCAGCGACATTATCACATACTAGCAAAAAGGATGCTAACAAAGGAGTACGTGGTTGAGGACGTTGATGGGGAGATGACAGGATCTGATTGGTGTCCACCATCTCTGCCGCCTGAACACGTTCAGCAGCTGAAAACACTTGGCCTCCTATGA 972 0.4414 MADHSDPLPLIPPPLITEPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPYYLRVHVAADRKWRTLKFRFFVTRDILFIFLTVQLVIASLAYLIYLMDGYQQHWLRLVWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWCPPSLPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3096 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Sto3g3096 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Sto3g3096 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Sto3g3096 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Sto3g3096 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Sto3g3096 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Sto3g3096 323 SUPERFAMILY RING/U-box 29 86 - -
Sto3g3096 323 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3096 Sto-Chr3 35733542 35738372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3096 1 323 C3H Transcription Factor Family AT2G22120 84.877 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3096 - - gmx:100791777 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3096 3 35733542 35738372 Sto3g3096 3 35733542 35738372 CCT
Sto3g3096 3 35733542 35738372 Sto3g3096 3 35733542 35738372 ECH