Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3092 ATGACGGCAATCTCTGAGATCTTCTCTAAGATTTGCACCAAGGCCATAATCCTATTAGCTCTGTTGCTAATACAACTTATGCTACTTATAAAGAAGCTCAGGTCAGAGACACGTCCTATTAGCACCACCCAATATCTCAAACTCATCGAACAGAAGAACCCCACAATTTCTTTCACCAAAAGGTTGAAGCAAGAGCATGTAGATTGCAGGGTGTGCTTATCTGAACTCAAGGAAGGGCAGAGAGTGAGGAATTTGAAATGCAAACACACATTTCACAAAGATTGCTTGGACAAGTGGTTGCAGCAATACTGGGCTACCTGCCCACTTTGCAGGAACCAAATATTGCCTGATGATGTTGTGGCCAAGTATCGGCAGCTTCAAAATCAGGTAGAATCTGATGGGAATGATGAGCAGATTAACTTCTTGTTAAACGCACTGCGTGGTGGAAGTTCTTTGCACAGATTTATCTGA 471 0.4268 MTAISEIFSKICTKAIILLALLLIQLMLLIKKLRSETRPISTTQYLKLIEQKNPTISFTKRLKQEHVDCRVCLSELKEGQRVRNLKCKHTFHKDCLDKWLQQYWATCPLCRNQILPDDVVAKYRQLQNQVESDGNDEQINFLLNALRGGSSLHRFI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3092 156 Pfam Ring finger domain 68 111 IPR001841 -
Sto3g3092 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 150 - -
Sto3g3092 156 SMART ring_2 69 110 IPR001841 -
Sto3g3092 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 116 IPR013083 -
Sto3g3092 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Sto3g3092 156 SUPERFAMILY RING/U-box 50 117 - -
Sto3g3092 156 PANTHER - 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3092 Sto-Chr3 35725682 35726152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3092 68 125 C3H Transcription Factor Family AT1G15100 56.897 1.35e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3092 K16282 - gmx:102669811 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3092 3 35725682 35726152 Sto3g3092 3 35725682 35726152 CCT
Sto3g3092 3 35725682 35726152 Sto3g3092 3 35725682 35726152 ECH