Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3060 ATGGCCACAGCTATAGACATgtataacaacaataataataccACCATGAGACCCTATTTCTTCGATCCTTTCACTGAAGAATTGATGAAAGCACTTGAACCTTTCATGAAAAGTAATTCCTCTGCTTCCACCTCCtctgtttctccttcttctccttctgtAAAAACCAGCTCCATCGGGTTGAACCAACTCACACAGTCCCAAATTCTTCAAATTCAAACCCAAATGCATCATCAAAAGCAAGACCGCCCACTCAAATTCCTCACCCCAAAGCCTCTTCCCATGAAGAAGCAAATCTCCACTCCTCAAAAACCTCTGAAACTATACCGCGGGGTGAGGCAGAGACATTGGGGGAAATGGGTCGCCGAGATCCGACTACCCAAGAACCGGACCCGGCTCTGGCTCGGGACCTTTGATACCGCCGAGGAAGCGGCGTTGGCGTACGACAGCGCGGCGTTTAAACTCAGGGGAGACTTCGCTCGCCTCAATTTCCCCCATCTTCGTCACTACGGCCCTCACGTCGTCGTCGGCGGCGAGTTCGGCGGTGTCGTTAAGCCTCTTCATTCCGCCGTGGACGCTAAGCTTCAAGCTATATGTGAAACCTTGGAAGTTCAGAAACAGGGGAAGAAAACAGAGTCACTCTGTTTTGATGTTgtgggagaagaagaagaagaagacacaaAGGTTAATGTGAAATTACCGAGGAGTCCTCCTCCTACTCCTATGTATGAATCTTCTTCGCCTAAATCGGATGTCACTTATTTGGAATTTGGGGATTCTAATTGGGATGAGATAGAGAAGGGCAAGAGTCTGTCTGCAATGGAATTTTTGACAAATGCAGAGATTTGGTCCAAGGACAGTGATTATGGTGGTAATGGGGTTGTTTGGTCAGCTGGTGCTTTTTATTCCGGCAGGCCATTATCATGA 927 0.4444 MATAIDMYNNNNNTTMRPYFFDPFTEELMKALEPFMKSNSSASTSSVSPSSPSVKTSSIGLNQLTQSQILQIQTQMHHQKQDRPLKFLTPKPLPMKKQISTPQKPLKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDSAAFKLRGDFARLNFPHLRHYGPHVVVGGEFGGVVKPLHSAVDAKLQAICETLEVQKQGKKTESLCFDVVGEEEEEDTKVNVKLPRSPPPTPMYESSSPKSDVTYLEFGDSNWDEIEKGKSLSAMEFLTNAEIWSKDSDYGGNGVVWSAGAFYSGRPLS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3060 308 CDD AP2 107 167 IPR001471 GO:0003700|GO:0006355
Sto3g3060 308 MobiDBLite consensus disorder prediction 39 58 - -
Sto3g3060 308 Pfam AP2 domain 109 157 IPR001471 GO:0003700|GO:0006355
Sto3g3060 308 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Sto3g3060 308 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Sto3g3060 308 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Sto3g3060 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 53 - -
Sto3g3060 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 56 269 - -
Sto3g3060 308 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Sto3g3060 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 56 269 - -
Sto3g3060 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 53 - -
Sto3g3060 308 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Sto3g3060 308 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3060 Sto-Chr3 35406517 35407791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3060 4 265 AP2-EREBP Transcription Factor Family AT4G39780 50.185 6.43e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g3060 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3060 K09286 - twl:119998834 254.988