Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3030 ATGAGTTTTAAGGAAGTGTTTGGTAGCGTCGAGAGTGGAAGCAATGAAACAAGGGACAGAGCCGAGGAGGAGTTGGAGGATGGATCTGTAGCGAGAGGAGAGGTTGTGGAAGGAACGATGGGACTCTCCCACGCGCCTCCCCCACGCGCCGCCGAAACCCGACCGGATCCTCCTCACGATTCCAATACCAACAACGCGGATCCTCACGTTCCCCTCCAGAATCTCTCCCTGGTTCGAGCGAGGATGGAGAATCTTCAACGCTTCATATCCGAATCTATCAACTCCAACGCCCTCGTCAGCAAGCACCAGATGGACATGGTGTCCAGCGAGATCGTCTCCGCCGTCCACCAGATTATCGTCAACGGCGCCGCCCTCGTCTCCTACTCGCAGAATTtgacggcggcggcggcggcgggaGACCTTCCGAAGCTAGGGTTTGATTTGGATCATTCGTCGTCGTTTTCGGGAAAGGCGAATTTGAAATCCGAAGCGTCGGACGACGACGAATTGGTGAAAGATTGCGAGGTCGTGGAGCTCGACGCCGTGGAATTGCTCGCCGAACACGTTCATTTCTGCGAGATCTGCGGGAAAGGGTTCAGGCGCGACGCGAATCTGCGGATGCACATGCGCGCACATGGAGATCAGTTCAAGACGCCAGAAGCTTTGGCGAAACCGTCGGAGGAGAAGGTGGATCTCACGCGCCCCACGCGCTTCTCGTGCCCCTTCGAAGGATGCAATCGGAACAAGAAGCACAAGAAATTCCGGCCGCTGAAGTCGATCGTGTGCGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTACTCGTGCAATCGATGCCACAAGAAGAATTTCTCGGTGCTCTCGGATTTGAAGAGCCACTTGAGGAATTGTGGGGAGTCCAAGTGGAAATGCTCGTGTGGGACCACGTTTTCGAGGAAGGATAAGCTCTTCAAGCACATTGCTCTGTTTGATGGGCATATGCCAGCACTTGCAGGGGATGAAGAGgagaaagggaagaagaagcaagTGGTGGcgatggaggaagaagaagaagaagatgatcagATTGATATAAAAAGCCAtaaggagatgatgttgatgAAGGAAGATGAAGATCATGATGGGTTACCTGATGGATTCTTCGATGATTTAGATGGTTTTGGGTCACTTGAGAATTACTGTTTATGGAATACTACTTCCTTCAATATTTGA 1218 0.4803 MSFKEVFGSVESGSNETRDRAEEELEDGSVARGEVVEGTMGLSHAPPPRAAETRPDPPHDSNTNNADPHVPLQNLSLVRARMENLQRFISESINSNALVSKHQMDMVSSEIVSAVHQIIVNGAALVSYSQNLTAAAAAGDLPKLGFDLDHSSSFSGKANLKSEASDDDELVKDCEVVELDAVELLAEHVHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSEEKVDLTRPTRFSCPFEGCNRNKKHKKFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHLRNCGESKWKCSCGTTFSRKDKLFKHIALFDGHMPALAGDEEEKGKKKQVVAMEEEEEEDDQIDIKSHKEMMLMKEDEDHDGLPDGFFDDLDGFGSLENYCLWNTTSFNI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3030 405 SUPERFAMILY beta-beta-alpha zinc fingers 187 213 IPR036236 -
Sto3g3030 405 Pfam Zinc finger, C2H2 type 191 212 IPR013087 -
Sto3g3030 405 Gene3D Classic Zinc Finger 189 212 - -
Sto3g3030 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Sto3g3030 405 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 59 399 IPR044300 GO:0010044|GO:0010447
Sto3g3030 405 MobiDBLite consensus disorder prediction 57 71 - -
Sto3g3030 405 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Sto3g3030 405 Gene3D Classic Zinc Finger 263 331 - -
Sto3g3030 405 MobiDBLite consensus disorder prediction 15 31 - -
Sto3g3030 405 MobiDBLite consensus disorder prediction 1 71 - -
Sto3g3030 405 SMART c2h2final6 304 328 IPR013087 -
Sto3g3030 405 SMART c2h2final6 276 297 IPR013087 -
Sto3g3030 405 SMART c2h2final6 238 271 IPR013087 -
Sto3g3030 405 SMART c2h2final6 190 212 IPR013087 -
Sto3g3030 405 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 59 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3030 Sto-Chr3 35098764 35101043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3030 175 336 C2H2 Transcription Factor Family AT1G34370 64.242 2.73e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g3030 zf-C2H2 0.00029 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3030 - - egr:104436949 401.749