Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3003 ATGGAATCGTCGACGCACTTGTCGTTTTGCGAGAAGAAACGTCGTTTAAGCGTGGATCAAGTGAAGGCGTTGGAGAAGAACTTCGAGGTAGAGAACAAGCTCGAGCCGGAGAGGAAGGTCAAGCTCGCGCAAGAGCTCGGGTTGCAGCCTAGACAAGTCGCCGTTTGGTTCCAGAACCGTCGTGCACGGTGGAAGACCAAGCAGTTAGAACGCGATTACGCCATTCTCAAAGCCAATTACGATGCCCTTAAGCTCAACTTCGACGCCCTCCAGAACGACAACGAAGCATTACGCAAACAGATTAAGGAATTGAAATCGAGGGTGGAAGAAGAGAAAACGACGACGGAGAGCGACGTTTCGGTGAAAGAAGAGATCGTAAGGGCGGCAGCGGCTGAGTCGGACGAGAAAGCGCCGGTGGCTGTTGAAACGACGTCGTCCGTTCCGGAATCGGAGTTGAATTACGAGTGGTTGAACAATGGAGGAGGACTGTCACTGATACCGCCGGATTTCAAAGACGGCGCGTCGGATAGCGACTCAAGCGCAATCTTGAacgaagataataataataacagttCAAACGGCGCCGTTTCGTCGTCCGGCGGAGGGGATCTTCAGAGCCGCCagaaccaccaccaccacctcctcctGATGTCGCCGTCGACGACTTCGGCCGCCGTGAACTGCTTCGAATTCTCGTCGAGGACGTATCAGAGTCAGTACGCGAGGATGGAGGAGCACAACTTCTTCAGCGCGGAAGAAGAAGCGTGCGATTTCTTCTCGGAAGAGCAAGCGCCCACACTCCAATGGTACTGTTCTGACCGCTGGAGTTGA 831 0.5126 MESSTHLSFCEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYAILKANYDALKLNFDALQNDNEALRKQIKELKSRVEEEKTTTESDVSVKEEIVRAAAAESDEKAPVAVETTSSVPESELNYEWLNNGGGLSLIPPDFKDGASDSDSSAILNEDNNNNSSNGAVSSSGGGDLQSRQNHHHHLLLMSPSTTSAAVNCFEFSSRTYQSQYARMEEHNFFSAEEEACDFFSEEQAPTLQWYCSDRWS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3003 276 Coils Coil 66 114 - -
Sto3g3003 276 MobiDBLite consensus disorder prediction 167 207 - -
Sto3g3003 276 SMART HOX_1 10 71 IPR001356 GO:0003677
Sto3g3003 276 SUPERFAMILY Homeodomain-like 8 69 IPR009057 -
Sto3g3003 276 Pfam Homeobox associated leucine zipper 67 108 IPR003106 GO:0006355|GO:0043565
Sto3g3003 276 CDD homeodomain 12 68 IPR001356 GO:0003677
Sto3g3003 276 MobiDBLite consensus disorder prediction 177 207 - -
Sto3g3003 276 ProSitePatterns 'Homeobox' domain signature. 42 65 IPR017970 GO:0000981|GO:0006355
Sto3g3003 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 5 267 - -
Sto3g3003 276 Gene3D - 10 74 - -
Sto3g3003 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 267 IPR045224 GO:0003700
Sto3g3003 276 Pfam Homeodomain 12 65 IPR001356 GO:0003677
Sto3g3003 276 PRINTS Lambda-repressor HTH signature 38 47 IPR000047 GO:0003677
Sto3g3003 276 PRINTS Lambda-repressor HTH signature 47 63 IPR000047 GO:0003677
Sto3g3003 276 ProSiteProfiles 'Homeobox' domain profile. 11 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3003 Sto-Chr3 34792103 34792997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3003 6 276 Homeobox Transcription Factor Family AT4G40060 44.637 7.69e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto3g3003 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3003 K09338 - csin:114284213 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3003 3 34792103 34792997 Sto3g3003 3 34792103 34792997 CCT
Sto3g3003 3 34792103 34792997 Sto3g3003 3 34792103 34792997 ECH
Sto3g3003 3 34792103 34792997 Sto4g0587 4 3692012 3693115 ECH