Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3001 TTGAAGTTTGATGAAGCCTTGGATTGGAAACGTATGCATATGCTGATAATGCGGGAGCGTCGCAGGCTTGAGGAGGGATTGCCCATATATGCATACCGGAGGGATATTTTGCAGGAAATTCATTCTCAACAGATAATGGTATTAATAGGAGAGACTGGTTCAGGGAAGAGTACGCAGTTGGTTCAGTTTCTTGCTGATTCAGGCATTGGTGCTAATGAATCCATTGTATGCACTCAGCCTCGCAAGATTGCGGCCACATCCTTGGCACATAGGGTCCAGGATGAAAGTACTGGATGCTATGAAGGACACTCTGGCCCTGCCATTATTGCTTCATATGTTTCTGATGTTGTTAGACTGGCAACTGAAATTCACAAAACGGAAGAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGATAGAAGTGGAATGGGCTTGTGAGAAATTTGAAGCTTCTGCTGCTGTTGCTTTGCCCTTACATGGCAAACTTTTGCCTGATGAGCAATTTCGTGTTTTTCAGAACTACCATGGAAAGAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACGTCACTTACAATCCCTGGTGTCAAGTATGTCATAGATTCTGGGTTCGTTAAAGACAGTCGATATGAACCTGGCAGTGGCATGAATGTACTTAAAGTTCGCTGGATCAGCCAGAGCTCTGCTACTCAACGGGCTGGTCGTGCTGGGAGGACTGGGCCTGGTAGTTGCTATAGACTCTACTCAGAATCTGATTATAATTCTATGGCACCAAATCAAGAACCCGAGATTCGACGAGTTCATCTTGGTGTAGCAGTTTTGAGGATACTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTCGTTGATGCTCCAAGTCCTAGTTCTGTTGAGATGGCAATAAGGAATCTAATTCAATTAGGAGCAATTAGATTGAGCAATAAGATTTATGAATTAACTGATGATGGTAGGTACTTGGTAAAGATGGGTGTTGAGCCTAGGCTTGGTAAACTTATTCTTGGCAGTTACCATTATGGTTTGGGTAAAGAAGGCCTTGCCCTTGCTGCAGTTATGGCCAATGCCAGTAGCATATTTTGCAGGGTAGGAACTGAAGGTGATAAACTAAGATCTGATTGTCTTAAGGTGCAATTTTGCCATCGTAATGGTGACCTCTTTACTCTTCTTTCTGTTTACAAGGAATGGGATGCTGTGCCTCGAGAGAGGAAAAACAAATGGTGTTGGGAAAATAGTATTAATGCCAAGTCCATGAGGAGATGCCTAGACACCATTATGGATCTGGAATCTTGCCTTCACCGTGAACTTAGTGTTGTTATTCCAAGCTACTGGCGTTGGGATCCTTACATGCCTTCTGATTGtgatatttttctaaaaaaggtCATATTGTCCTCACTTGCTGAGAATGTAGCCATGTACACTGGATGCCATCAACTTGGTTATGAAGTGGCACTAACTGGGCAACTTGTTCAACTACATCCATCTTGTTCATTGCTAGTATTTGCTGAGAAACCTAGATGGGTTGTTTTTGGTGAGCTCCTTTCAGTTTCTAGTCAATATTTGGTCTGTGCGAATGCTTTTGACTTTGAGTCATTGTGCACCCTTGATCCCCCACCCTTGTTTGATGTATTCAAGTTGGAAAGGAAGCAATTGCAAATGAAGATGTTGAGTGGTTTTGGCAGTATTCAGCTCAAGAGATTTTGCGGGAAAGCCAATGGTAATCTGCTTGCTCTTGTCTCGCGCATAAGAACTGCTTGCAAGGATGAACGTATCTTCATTGAAGTCAATGTTGAGCAGAATGACATTCAGTTATATGCCACTTCACATGACATGGAAATGGCCCTTGGGTTGGTTAATGAAGTTTTGGAATATGAGAGAAAATGGTTGCGTACTGAATGCTTGGAGAAATGTTTGTATCATGGGTCTGGTGTCTCTTCTCCGTTAGCTCTGTTCGGATCTGGTGCTGAGATAAAGCATTTGGAAATTGACAAATGTTGCTTGAGTGTTGATGTATGCCATCCAAATGTAAGTGCATTTGATGATAAGGAGCTTTTGATGTTTTTTGAGAAGAATTCCTCTGGTTGTATATGTGCTGTGCATAGGTTAACAGGTACAGTGATGGATGCTGAAGATAGAGAAAAGTGGGGAAGGATAACATTTCTCTCCCCTGATGCTGCCAAAAGAGCTGCTGAGCTAGACGGAGAGGAGTTTCATGGCTCCTCTTTGAAAATAGTTCCTACACAAACAACTACGGGAGGGGACAAAACCTTTTCATTTCCAGCTGTTAAAGCTAAAATATGTTGGCCTCGTAGGCTTAGCAAGGGATTTGGCATTCTTAAATGTGAGATAAAGgatgttaattttattttaagagaTTTTTATAACCTTGCTATAGGAGGGAGGTATGTTCGATGCAAAGCTGGGAGGCGGGGCTTGGATAGTGTTGTGATAAGTGGATTTGATAAAGAACTCTCAGAAGCTGAAGTTCTAGATGTACTAAGAACTGCTACAAGTAGGAGAATTGTGGATTTTTTCTTGGTGAGTGGAGAAGCTGTTGGAAATCCCCCATGCAGTGCTTGTGAAGAGGCACTCCTAAAAGAAATTTCTCCCTTTATGTCCAAGAGATACCCCCACACTAGTTCTTGCCGAGTTCAGGTATTTCCACCTGAGCAAAAGGATGCCTTCATGAGAGCTCTGATCACTTTTGATGGGAGGTTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGACATTCTCTATTCCCGTGTATCGTGTTATTAAGGAGCAACTGGACAAGTTACTTGCGAGCTTCAGCAGTATGAAGGGTCTTGAATGGAACCTAGACACGACGGCTAATGGTTCTCACCGGATTAAGATATCGGCCAATGCCACTAAGACAGTAGCAGAAGTTAGGAGACCTCTGGAAGAACTGACAAGAGGGAGAACCATAGATGACAAGCGTCTCACCCCTACGGTTCTGCAGCTCCTGTTGTCCAGAGATGGGTTTAGTCTTAAATGCTCGATACAGCAAGAGACAGGAACACACATTCTATTTGACAGGCACAACCTGAATGTACGGGTGTTTGGTTCCCCAGAGAAGGTTGATTTGGCTCAGCAGAAGATAATTCAGTCTTTACTCTCTCTCCATGAGAGCAAGCAGTTGGAAATCCACCTCCGGGGGAGAGATCTACCTCCTGACTTAATGAAGCAAGTGGTTAAGAAGTTCGGGCCGGATCTTCGCGGTCTGAAAGAGAAGATACCGGAGGCAGACTTTACTCTCAACATACGTCACCAGGTAATCCTTGTTCATGGTAATATGGAGTTGAAACCAAAAGTAGAGGCAATAATTTATGAGATTGCTCGTTCAAGTAATCATCTGGCCAGACTTGGGACTGGACCCGACTGCCCAATTTGCTTGTGTGACGTCGAGGATGGTTATCGGCTCGAAGGCTGCGGTCATCTCTTCTGCCGGTTGTGTCTGATGGAGCAATGTGAATCTGCTATAAAAAACCAAGACAATTTCCCAATATGTTGTGCTCATGAGGGCTGTGGGGATCTCATTTTTCTTACTGATTTAAGATCTCTCATGTTAAACGAGAAGTTAGACGAACTCTTCCGGGCCTCTCTGGGAGCTTTCGTTGCATCCAGCGAGGGCAAATACAGGTTTTGCCCGTCTCCCGACTGCCCCTCCGTATATCGAGTGGCCAGCCCCGAGACGGCCGGCGAGCCATTCCTTTGCGGATCATGTTACGCCGAGACATGCACGAGGTGTCACTTGGAGTATCATCCCTACATTTCGTGTGAGAAGTACAAGGAGTTCAAGGAAGATCCAGACTCATCTCTGAAGGAATGGTGCAAAGGGAAAGAACACGTGAAGAGCTGCCCTGCATGTGGGTACATAATAGAGAAGGTAGATGGATGCAACCACGTTGAGTGTAAGTGTGGGAAGCATGTGTGTTGGGTTTGCTTGGAGTTCTTCGGTACTAGTGATGATTGTTATAACCATTTGAGAAAGATACACTCAGCCATAATTTAA 4131 0.4372 LKFDEALDWKRMHMLIMRERRRLEEGLPIYAYRRDILQEIHSQQIMVLIGETGSGKSTQLVQFLADSGIGANESIVCTQPRKIAATSLAHRVQDESTGCYEGHSGPAIIASYVSDVVRLATEIHKTEEEGTILAFLTSQIEVEWACEKFEASAAVALPLHGKLLPDEQFRVFQNYHGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSRYEPGSGMNVLKVRWISQSSATQRAGRAGRTGPGSCYRLYSESDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSVEMAIRNLIQLGAIRLSNKIYELTDDGRYLVKMGVEPRLGKLILGSYHYGLGKEGLALAAVMANASSIFCRVGTEGDKLRSDCLKVQFCHRNGDLFTLLSVYKEWDAVPRERKNKWCWENSINAKSMRRCLDTIMDLESCLHRELSVVIPSYWRWDPYMPSDCDIFLKKVILSSLAENVAMYTGCHQLGYEVALTGQLVQLHPSCSLLVFAEKPRWVVFGELLSVSSQYLVCANAFDFESLCTLDPPPLFDVFKLERKQLQMKMLSGFGSIQLKRFCGKANGNLLALVSRIRTACKDERIFIEVNVEQNDIQLYATSHDMEMALGLVNEVLEYERKWLRTECLEKCLYHGSGVSSPLALFGSGAEIKHLEIDKCCLSVDVCHPNVSAFDDKELLMFFEKNSSGCICAVHRLTGTVMDAEDREKWGRITFLSPDAAKRAAELDGEEFHGSSLKIVPTQTTTGGDKTFSFPAVKAKICWPRRLSKGFGILKCEIKDVNFILRDFYNLAIGGRYVRCKAGRRGLDSVVISGFDKELSEAEVLDVLRTATSRRIVDFFLVSGEAVGNPPCSACEEALLKEISPFMSKRYPHTSSCRVQVFPPEQKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFSIPVYRVIKEQLDKLLASFSSMKGLEWNLDTTANGSHRIKISANATKTVAEVRRPLEELTRGRTIDDKRLTPTVLQLLLSRDGFSLKCSIQQETGTHILFDRHNLNVRVFGSPEKVDLAQQKIIQSLLSLHESKQLEIHLRGRDLPPDLMKQVVKKFGPDLRGLKEKIPEADFTLNIRHQVILVHGNMELKPKVEAIIYEIARSSNHLARLGTGPDCPICLCDVEDGYRLEGCGHLFCRLCLMEQCESAIKNQDNFPICCAHEGCGDLIFLTDLRSLMLNEKLDELFRASLGAFVASSEGKYRFCPSPDCPSVYRVASPETAGEPFLCGSCYAETCTRCHLEYHPYISCEKYKEFKEDPDSSLKEWCKGKEHVKSCPACGYIIEKVDGCNHVECKCGKHVCWVCLEFFGTSDDCYNHLRKIHSAII 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3001 1376 ProSitePatterns Zinc finger RING-type signature. 1183 1192 IPR017907 -
Sto3g3001 1376 PANTHER ATP-DEPENDENT RNA HELICASE 14 99 - -
Sto3g3001 1376 ProSitePatterns Zinc finger C2H2 type domain signature. 1351 1372 IPR013087 -
Sto3g3001 1376 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 118 281 IPR001650 -
Sto3g3001 1376 CDD KH-I 1039 1073 - -
Sto3g3001 1376 Gene3D - 263 306 IPR042035 -
Sto3g3001 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 419 IPR027417 -
Sto3g3001 1376 ProSiteProfiles TRIAD supradomain profile. 1163 1371 IPR044066 -
Sto3g3001 1376 Gene3D - 103 261 IPR027417 -
Sto3g3001 1376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1164 1243 IPR013083 -
Sto3g3001 1376 Gene3D - 1295 1374 - -
Sto3g3001 1376 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 465 538 IPR011709 -
Sto3g3001 1376 SMART ibrneu5 1300 1364 IPR002867 -
Sto3g3001 1376 SMART ibrneu5 1234 1299 IPR002867 -
Sto3g3001 1376 Pfam Helicase conserved C-terminal domain 121 241 IPR001650 -
Sto3g3001 1376 SMART helicmild6 143 241 IPR001650 -
Sto3g3001 1376 SUPERFAMILY RING/U-box 1321 1368 - -
Sto3g3001 1376 SMART ha2_5 301 397 IPR007502 GO:0004386
Sto3g3001 1376 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 106 1306 - -
Sto3g3001 1376 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 14 99 - -
Sto3g3001 1376 CDD SF2_C_RHA 102 249 - -
Sto3g3001 1376 SUPERFAMILY RING/U-box 1166 1229 - -
Sto3g3001 1376 Pfam IBR domain, a half RING-finger domain 1243 1299 IPR002867 -
Sto3g3001 1376 PANTHER ATP-DEPENDENT RNA HELICASE 106 1306 - -
Sto3g3001 1376 Pfam Helicase associated domain (HA2) 302 394 IPR007502 GO:0004386
Sto3g3001 1376 ProSiteProfiles Zinc finger RING-type profile. 1167 1209 IPR001841 -
Sto3g3001 1376 SUPERFAMILY RING/U-box 1249 1305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3001 Sto-Chr3 34753252 34758869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3001 1182 1358 C3H Transcription Factor Family AT2G31770 28.723 1.03e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3001 K12818 - gmx:100810008 2080.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3001 3 34753252 34758869 Sto3g3001 3 34753252 34758869 ECH