Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2996 ATGGAGGCGGCGCCAACGATGATGATGATCAATGGCTCGCGAATATCGCCCGAGCCGCCCGTGCCCTCGCAGTCGCAGGCGGCGCCGGCTCCCGTGCCGCCGACGGATGCCGCCGCCACCGCTGTTCTTACGCGCGGCAGCGAGGGTCAGAGTGAGGCGAGCGATAACGGCGTCGTTTTTGAAGGCATTTGGAGCTCGAAGAGAGGAAGGCGCGGAGATGATGACGAGGAGGCTTCTTCGTCTAACATGCCTCCTGGCTATTCTGGATATACTACCGTCAATGCTAAAACTTATTACTCGCTGCCACAGGCGCCGCCGCCACCCAGGGGAACACGGCCCCCGCGGCGTCGGCGTCTACGTTGTAGCATTGACCAGTGCCCCCTCCTCTTATTCGTCGTAGCGAAGGGCCCGGATTTCGCCACGTCATCCGCGGACTGCGCCGTGTGCTTGGGCGAGTTAGAAGACCGGGACAAGGTCTGGTTCCTCCCGAGATGCCGGCACGTCTTCCATCCAGACTGCATCGACGGGTGGTTGTGCCTTCGACTCACCTGTCCCGTTTGTCACACGCGCCTGATCGCCGTCGAGCCCGGAATGAGCTCTCCTCCGTCGCAGCCAGAGGATCCCGCGGCGATGGCGACGTGGAGGTCAGGCACCACAATCATTTTACCCCTTGGCCAAGGCTTACGTGACATGAAGACTTCATTTAGCATGATGGTAGTAGGCTTCATCCTCGCTTTATTCACAATGGGCCTCTTCTGGATATACTACCGTCAATGCTACAACTTATTACTCGCTGCCATGAGTGCCGCCGCCACCCGGGGGAATACGGCCCCAGCCGCAGCGTCGGCGTCTACCGCGGCCTCCCGTCGCCGCCAAGAGGCCATCGACCAATGCCCCCTCCTCCTGTTCGCCGCGGCGAAGGGCCCGGATTTCGCCACGTCGTCGGTGGACTGCACCGTGTGCTTGGGCGAGTTAGAAGACCGAGAAAAGGTCCAGTTCCTCCCTAGATGCCGACACGTCTTCCATCCGGACTGCATCGACGAGTGGTTGCGCCTCCGACTCACCTGTCCCGTTTGTTGCACGCGCCTGATCGCCACCGAGCCTGGAACGAGCTCTCCCCCGCCGCAGCCGGAGGATCCTGCCGCCGATGGCGACATGGAGGGTGGGTCCCTACCCACGGAGGAGGCATCGGGACACTCGCTGGTGATGGCACGTGAGGATGAGACGTCAGGCACCACAATCATTTTACCCCTTGGCCAAGGCTTACGTGACATGAAGACTTCATTCAGCATGATGGTAGTAGGCTTCATCCTTGCTTTATTCACAATGGGCCTCTTCTGGATATTCTACCGTCAATGCTACAACTTATTACTCGCTGCCACGagcgccgccgccgccacccGGGGGAACACGGCCCCCACGGCGGCGCTGTCTACCGCTGCCTCCCGCCGCCGCCAAGAGGCCATCGACCAGTGCCCCCTCCTCTTGTTCGCCGCGGCGAAGGGACCGGATTTCGCCACGTCTTCCGTGGACTGCGCCGTGTGCTTGGGCGAGTTAGAAGACCGGGACAAGGTCCGATTCCTCCCGAGATGCCAGCACGTCTTCCATCCGGATTGCATCGACAGGTGGTTGCGTCTCCGACTCACCTGTCCTGTTTGTCGCACGCGCCTGATCGCCGCCGAGCCCGGAACGAGCTCTCCCCCGCCGCAGCCGGAGGATCCCGTTGTCGCTGGCGACGTTGAGGGTGGGTCCCCACCCACGGAGGAGGCATCGGGACACTCACTGGTGATGGCGCGTGAGGATGAGACGTCAGGCACCACAATCATTTTACTCCTTGGCCAAGGCTTACGTGACATGAAGACTTCATTTAGCATGATGGTAGTAAGCTTCATCCTCGCTTTATTCACAATGGGCCTCTTCTGGATATACTACCGTCAATGCTACAACTTGTTACTTGTCGCCACGggcgccgccgccgccacccGGGGGAACACGGCCCCCGCTGCCGCCAAGAGGCTATCGACTAGTGCCCCCTCCTCTTGTTTGCCGCGGCGAAGGGACCGGATTTCGCCACGTCGTCTGTGGACTGCGCCGTGTGCTTGGGCGACACGTCTTCCATCCGAATTGCATCGACAGGTGGTTGCGCCTTCGACTCACTTGTCCCGTTTGTCGCACTCGCCTGATCGCCGCCGAGCCCGGAACGACCTCTCCCCCGCCGCAGCTGGCGACGTAGAGGGTGGGTCCCTACCCACGGAGGAGGCATCGGGACACTCGGTAGTGATGGCGCGTGAGGATGAGACGGTGGGGGATCAGATTAGGGAGAATGactctgatgatgatgatgataaggcTTCGTCGTCTAACATTCCTCCTGTTTGA 2379 0.5927 MEAAPTMMMINGSRISPEPPVPSQSQAAPAPVPPTDAAATAVLTRGSEGQSEASDNGVVFEGIWSSKRGRRGDDDEEASSSNMPPGYSGYTTVNAKTYYSLPQAPPPPRGTRPPRRRRLRCSIDQCPLLLFVVAKGPDFATSSADCAVCLGELEDRDKVWFLPRCRHVFHPDCIDGWLCLRLTCPVCHTRLIAVEPGMSSPPSQPEDPAAMATWRSGTTIILPLGQGLRDMKTSFSMMVVGFILALFTMGLFWIYYRQCYNLLLAAMSAAATRGNTAPAAASASTAASRRRQEAIDQCPLLLFAAAKGPDFATSSVDCTVCLGELEDREKVQFLPRCRHVFHPDCIDEWLRLRLTCPVCCTRLIATEPGTSSPPPQPEDPAADGDMEGGSLPTEEASGHSLVMAREDETSGTTIILPLGQGLRDMKTSFSMMVVGFILALFTMGLFWIFYRQCYNLLLAATSAAAATRGNTAPTAALSTAASRRRQEAIDQCPLLLFAAAKGPDFATSSVDCAVCLGELEDRDKVRFLPRCQHVFHPDCIDRWLRLRLTCPVCRTRLIAAEPGTSSPPPQPEDPVVAGDVEGGSPPTEEASGHSLVMAREDETSGTTIILLLGQGLRDMKTSFSMMVVSFILALFTMGLFWIYYRQCYNLLLVATGAAAATRGNTAPAAAKRLSTSAPSSCLPRRRDRISPRRLWTAPCAWATRLPSELHRQVVAPSTHLSRLSHSPDRRRARNDLSPAAAGDVEGGSLPTEEASGHSVVMAREDETVGDQIRENDSDDDDDKASSSNIPPV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2996 792 SUPERFAMILY RING/U-box 506 559 - -
Sto3g2996 792 Pfam RING-like zinc finger 145 174 IPR001841 -
Sto3g2996 792 SUPERFAMILY RING/U-box 139 194 - -
Sto3g2996 792 ProSiteProfiles Zinc finger RING-type profile. 318 359 IPR001841 -
Sto3g2996 792 MobiDBLite consensus disorder prediction 1 87 - -
Sto3g2996 792 Pfam Ring finger domain 511 554 IPR001841 -
Sto3g2996 792 Pfam Ring finger domain 317 359 IPR001841 -
Sto3g2996 792 SUPERFAMILY RING/U-box 312 365 - -
Sto3g2996 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 365 IPR013083 -
Sto3g2996 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 559 IPR013083 -
Sto3g2996 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 193 IPR013083 -
Sto3g2996 792 MobiDBLite consensus disorder prediction 561 594 - -
Sto3g2996 792 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 231 409 - -
Sto3g2996 792 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 425 602 - -
Sto3g2996 792 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 120 199 - -
Sto3g2996 792 MobiDBLite consensus disorder prediction 367 398 - -
Sto3g2996 792 MobiDBLite consensus disorder prediction 716 792 - -
Sto3g2996 792 PANTHER RING FINGER DOMAIN-CONTAINING 120 199 - -
Sto3g2996 792 PANTHER RING FINGER DOMAIN-CONTAINING 425 602 - -
Sto3g2996 792 PANTHER RING FINGER DOMAIN-CONTAINING 231 409 - -
Sto3g2996 792 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Sto3g2996 792 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Sto3g2996 792 CDD RING-H2_PA-TM-RING 511 554 - -
Sto3g2996 792 SMART ring_2 146 187 IPR001841 -
Sto3g2996 792 SMART ring_2 512 553 IPR001841 -
Sto3g2996 792 SMART ring_2 318 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2996 Sto-Chr3 34662017 34698374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2996 428 576 Rapid Response to Elicitors AT3G05200 35.897 3.48e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2996 K10664 - sspl:121765113 114.39