Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2960 ATGGCAGAAACCGGTATTGTCCGGTTTCCGGGAAGCCTAGACCCACATGCGGAAGAGTTCATACCTAGAAATattcccaccaccaccaccaccacaaccaCCCAACTGTACTACCCTTACGCGCCCACCGGAGCGCTTCAACTTCACGCTCTGGCGGTTGGTGTTCCCTATCCACACTTCTCTGCTCCCACGGCGTACGTTAGCCAGCTGGCGgttgcggcggcggcggcgcctCCCGCTGCTGCCGCGCCGTCCTCCACCTCGCCGACGCGGTCGCTGCTGCTGAGCTCCGTTCCGCCGTCGGAGTCCGTCAGCGAGTCGGCGTTGCGGCGGGAATTGGAGGTGTTCGGCGATGTGAGGGGCGTGCAGATGGAGAGGCTGCGAGACGGAATCGTGACCGTTCATTTCTACGACTTGAGACATGCAGAGATGGCGTTGGTGGCGATTCGGAAGCAGCACATGCAGCAGCAGACCAGGCTCCGGAATTACTACGCTTCCTTGATGGCGAAGACGCGCAATTCGGCACTTCCGGAACCGCctccaccaccgccgccgccggcgGCGGCCACGCGTGGGCTTATAGCGGGCCGGGCCGTCTGGGCCCAGTACATTGTCCCGCCGTATAACGCGGTTCCCGATGGGCCGAACCAAGGGACCATTGTGATTTTCAATTTGGATTCGGAGGTGTCTGCGGAGACTCTCCGACAAACGTTCGAGGCTTTTGGTCCTGTGAAGGAATTGAGAGATACGCCCTCCAAAAAGAACCAAAGGTTCGTAGAATTCTTCGACACAAGAGACGCCGCGAAGGCCTTGAAACAGATGAacggcaagcaaattcacggcaaAGCAGTCGTTATTGAGTTCAGTCGTCCCGGTGGTCATGGGAGAAAGTTCTTTAATGCCCTTCCTGCTGCAACGACAATCCCCAAAATGCCCTTGAATCTCCAGCCTAAACctcactcaccaccaccaccaccaccactcccCCGCAAAAACTCACGTCGTTTTGCTCCCCCTCCGCCACAACCCCAATTGTCGTCTAAGCAACCAAGCAGCAACAAGAACACTACAGATTCGGAGTGTGTGGAAACGACAGTGAGCGGGGTTGAAACGACAGTGAGTGGGAGCACAAAGCAGCATCATCATCAGCAGCAGCAGGTAATAAGAAGTAGGAATTGGAAAGGGAAGCAAGGGAAGAAGCAGGAAAGTCGGTTCTTAATAAAAGAAGACGCAATTGAAGAGTCAAGTTTGAAAGATTCCAGAACCACTGTCATGATCAAGAACATACCCAATAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAACCACTGCATACACTGCAACGAGCAGATTGGCGACGGCGACGACCAGCCTTTGTCCAACAAGTGTAATGTGGGATATGGATTTGTGAACATGACATCTCCAGAGGCAACTCTCAGGCTCTACAAGGCATTCCATCTCCAACATTGGGAGGTTTTTAACTCCAGAAAAATATGCGAGGTCACCTACGCAAGAGTCCAGGGCGTGGAGGCATTGAAAGAGCACTTCAAGAACTCGAAATTTCCATGCGAGATGGAGCATTACCTTCCGGTGGTGTTTTTGCCGCCTCGAGACGGGAGACAGTTGACGGAGCCACTTCCGATCGTGGGCCAGAAGCAAGGAGTGTCAAACTCCAAGGCTGATGAGGATGAGATCGCAGACGGAGAAGAAAGGGTAGAAGATTCTGGAATCAGCCAAAACGGCGTTGCCGTCGAGGGAGTGGTGACGGTGGAGGAAGAGAACGAGGGAGAAGTAGGAACTAGCTACCAAAGTATGGTTCTCTGTGCAATCACATCTCAAAAACCATCCAATCAAATGAATTAA 1869 0.4928 MAETGIVRFPGSLDPHAEEFIPRNIPTTTTTTTTQLYYPYAPTGALQLHALAVGVPYPHFSAPTAYVSQLAVAAAAAPPAAAAPSSTSPTRSLLLSSVPPSESVSESALRRELEVFGDVRGVQMERLRDGIVTVHFYDLRHAEMALVAIRKQHMQQQTRLRNYYASLMAKTRNSALPEPPPPPPPPAAATRGLIAGRAVWAQYIVPPYNAVPDGPNQGTIVIFNLDSEVSAETLRQTFEAFGPVKELRDTPSKKNQRFVEFFDTRDAAKALKQMNGKQIHGKAVVIEFSRPGGHGRKFFNALPAATTIPKMPLNLQPKPHSPPPPPPLPRKNSRRFAPPPPQPQLSSKQPSSNKNTTDSECVETTVSGVETTVSGSTKQHHHQQQQVIRSRNWKGKQGKKQESRFLIKEDAIEESSLKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQPLSNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGVEALKEHFKNSKFPCEMEHYLPVVFLPPRDGRQLTEPLPIVGQKQGVSNSKADEDEIADGEERVEDSGISQNGVAVEGVVTVEEENEGEVGTSYQSMVLCAITSQKPSNQMN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2960 622 Pfam RNA recognition motif 2 421 519 IPR007201 -
Sto3g2960 622 MobiDBLite consensus disorder prediction 83 101 - -
Sto3g2960 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 291 IPR000504 GO:0003723
Sto3g2960 622 Gene3D - 212 297 IPR012677 -
Sto3g2960 622 SMART rrm1_1 219 287 IPR000504 GO:0003723
Sto3g2960 622 SMART rrm1_1 92 161 IPR000504 GO:0003723
Sto3g2960 622 MobiDBLite consensus disorder prediction 310 402 - -
Sto3g2960 622 SUPERFAMILY RNA-binding domain, RBD 218 488 IPR035979 GO:0003676
Sto3g2960 622 SUPERFAMILY RNA-binding domain, RBD 66 154 IPR035979 GO:0003676
Sto3g2960 622 PANTHER TERMINAL EAR1-LIKE 1 50 569 - -
Sto3g2960 622 MobiDBLite consensus disorder prediction 554 578 - -
Sto3g2960 622 MobiDBLite consensus disorder prediction 81 101 - -
Sto3g2960 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Sto3g2960 622 MobiDBLite consensus disorder prediction 315 346 - -
Sto3g2960 622 MobiDBLite consensus disorder prediction 347 392 - -
Sto3g2960 622 PANTHER RNA BINDING PROTEIN 50 569 - -
Sto3g2960 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 284 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2960 Sto-Chr3 34294636 34297685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2960 213 345 Eukaryotic Initiation Factors Gene Family AT2G23350 29.139 2.30e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2960 - - adu:107469016 628.632