Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2950 ctgtCCATTCTTCAAACTTTCTCAATCATCCAGTGGGAAGACGAATCGACCGAAGAAGTTACTGTGAGTGAAGCTAGTAGTGAGGCTACCATTGGAGACATAATCACAAATAAAAAGCTTTTCATCCAGTCCCCAACAGAATCCTCGAACCTTAACCAGATTAGGATGTCTAATGTTGGCAATACTCTTCACATGGTTCTCGAAATCCTTCATTCTTCTCATCATCTCCACCCCACAACTTTCCCCAATCCTCCTCATAGCAAAAGCCCTCCCATCGTCCACCACCGCCTTATACACTATGCTCTCACGCCCCCTCCCACTCCCAACACATACGCCGAAGCCTTTAGCAGTGTCTCCATATCCAGCTTTGTCTCCCCATCATCCACCCTAACCAGATCCGAGCTTGTCGCCTCAATCTTAGTACTCCCATTCTCATGCTCGCTCTCTGACCCAGAAGAACTCGAGTCTCTGTTTTCCAAACAGGGGAAGAGCATCAATGCCTCGAGAAGGAACCTGGGTTTTTTGTCTTGCGTGACGGGAAACCCCATCGACGATTGCTGGAGATGCGACCCCAATTGGGAGAAGAACCGGAAGCGTCTCGCGGATTGTGCGATCGGGTTCGGGAAGCAGGCCATCGGGGGCCGAGATGGGAAAATCTACGTGGTGACCGACCCCGGGGACCACCCCGTGAGCCCGAAACCCGGGACATTACGCTACGGCGTCATTCAAAACGAGCCGTTGTGGATCATCTTCAAGCGGGACATGGTAATTAGGCTGAAGCAAGAGCTTCTAATGAACTCCTTCAAGACCATTGATGGAAGAGGAGTGAATGTACACATTTCAGGAGGGCCTTGTATTACTATACAATATGTGACAAATATTATCATCCATGGAATTAATATCCATGATTGTAAGCAAGGAGGGAATGCCTATGTTAGGGACTCTCCTTCACACTATGGGTGGAGGACGGTCTCGGATGGCGATGGGATCTCGATCTTCGGCGGAAGCCATGTTTGGGTGGATCATTGTTCTTTGTCCAATTGTCATGATGGACTCATTGATGCCATCCGTGGATCCACAGCTATTACTATCTCCAATAATTATATGACCCACCATAATAAGGTCATGCTTTTGGGTCACAGTGATGGTTACACAAGAGACAAGAATATGCAGGTCACCATTGCCTTTAACCATTTTGGGGAAGGGCTTGTTCAGAGAATGCCAAGGTGTAGACATGGTTATTTTCATGTGGTGAACAATGACTATACCCATTGGATAATGTATGCTATTGGAGGGAGTGCTTCCCCAACTATCAATAGCCAAGGCAATAGGTTTCTTGCTCCTAATGACAATACCTTTAAAGAGGTTACGAAGCGTGAGGATTCGCCAGCAAGCAAATggaagaattggaattggaggtCATCGGGAGACCTGATGTTAAACGGCGCGTTTTTCACGCCGTCCGGGAAGGGATCGTCTTCGACCTACGCCCGGGCGTCGAGCTTGTCGGCAAAACCATCTTCTGTGGTGGGTTCCATAACAGCAGGAGCTGGTTCACTCAACTGCAGAAAAGGCTCACGCTGCTGA 1587 0.4776 LSILQTFSIIQWEDESTEEVTVSEASSEATIGDIITNKKLFIQSPTESSNLNQIRMSNVGNTLHMVLEILHSSHHLHPTTFPNPPHSKSPPIVHHRLIHYALTPPPTPNTYAEAFSSVSISSFVSPSSTLTRSELVASILVLPFSCSLSDPEELESLFSKQGKSINASRRNLGFLSCVTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKQAIGGRDGKIYVVTDPGDHPVSPKPGTLRYGVIQNEPLWIIFKRDMVIRLKQELLMNSFKTIDGRGVNVHISGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTVSDGDGISIFGGSHVWVDHCSLSNCHDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDGYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRFLAPNDNTFKEVTKREDSPASKWKNWNWRSSGDLMLNGAFFTPSGKGSSSTYARASSLSAKPSSVVGSITAGAGSLNCRKGSRC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2950 528 SUPERFAMILY Pectin lyase-like 164 522 IPR011050 -
Sto3g2950 528 SMART amb_all 254 451 IPR002022 -
Sto3g2950 528 Pfam Pectate lyase 266 445 IPR002022 -
Sto3g2950 528 PANTHER PECTATE LYASE 133 525 - -
Sto3g2950 528 PANTHER PECTATE LYASE 18-RELATED 133 525 IPR045032 GO:0030570
Sto3g2950 528 Gene3D - 180 521 IPR012334 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 470 494 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 326 347 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 226 251 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 406 425 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 262 278 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 203 220 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 499 522 IPR018082 -
Sto3g2950 528 PRINTS Pollen allergen Amb family signature 428 447 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2950 Sto-Chr3 34180481 34190609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2950 119 528 Polysaccharide Lyase AT5G63180 73.821 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2950 K01728 - gmx:100782388 714.916