Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2930 ATGGAGAGCGGATTCTCGTCTCCTCGCCGCGATGCTTTTCCGGCCGGTCTGCGAGTTCTCGTCGTCGACGATGACCCGACGTGGCTAAGGATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGACGCTGCCTACCAACAAGGTTCGGCAGAGTTGGTTGATGGCTGGGTCTCTTACTGTCTTGGGTTTGAACCAGGTCGTGTGTATAAAAAAGGCTTTGTTGGGAGAGGCAAAACTCATTTCGTGACTACATGTGGGTTAGCAAGGGAGGCTCTAAACTTGCTTCGTGAAAGGAAAGATGGATATGACATTGTGATCAGTGATGTGAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATAATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTTCTGAAGCCAATAAGAATGAAAGAGCTACGAAACATATGGCAACATGTGTTCAGAAAGAGGATACATGAGGCAAGAGAATTTGAAAGTCATGAAGGCTTGGAAGGCATTCACTTACTGAGAAGTGGAACGGATCAGTCTGATGAGGGGATCTTTTTTGCTGTAGAAGATATGACCTgcatgaagaaaagaaaagatgttGATGGCAAACATGATGACAGAGAATTTGGAGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAGGCTGTGAATCAGATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATTTGATGAATGTTCCATGGCTCACTAGAGAAAATGTTGCCAGTCACTTGCAGAAATACCGTCTCTACCTGAGTAGGTTGCAGAAAGAGAACGAACAGAAATCTACCTCAAGTGGGAGCAAGCTTTCAGAGTTCCCTCCAAAGGACTCTCAAGCAACTTTTGGTTTCCAGAACTCAGCAATCAAGCAGCAAAATGATGTTGCAGTTGACAGCTTACCATTACCATTACCATTACCAAGTCATGATAATGCTGAGGCTAAAAGTCATGAATGTGACCTCAAGGGAATGGTTTCAGATTCCACAACAGAAAAAAGAAGAGCATTGTCTAGTAGAAGCATACCCGATACAAAAATCAGGACTTCTCTTGCACTACCTCTGGAGTCAGAAGGAGGAAGCCATGCAGTTTTTGATTGCACAATCCCAGCAACCACACAGTACAAGACATGGAGTGAACCTCCGGAATTGAAGCTCAAGAAAGAACGCACGCCCTCGTCCTCGTCCTCGTCCTTGCCGGTACATGttgcaccaccaccaccccagaGAGTTATGGCGAGTACTGGTGAATCTCCAGAGACTACCTCAAGTAAGAATTTGGCCATGAAAACACAGGGCTTCAATGTAAGCCTCATTTCTGATATGGATTTTTACCACAAAAACATACTTTTGGGGAGTGAGGTAGCATGTGCACCTTTGGATGAGGACTTGCACTTCTATTGGCTGCAAGGTGAATGCTGTAATATGAACTTAGGACTGCAGAATATAGAGATGCCGGAGTATTATGATCCCTTATATGATTCATCAGACTATTCAATAGTAGATCAAGGCCTATTCATAGCATAA 1650 0.4255 MESGFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEDAAYQQGSAELVDGWVSYCLGFEPGRVYKKGFVGRGKTHFVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESHEGLEGIHLLRSGTDQSDEGIFFAVEDMTCMKKRKDVDGKHDDREFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENEQKSTSSGSKLSEFPPKDSQATFGFQNSAIKQQNDVAVDSLPLPLPLPSHDNAEAKSHECDLKGMVSDSTTEKRRALSSRSIPDTKIRTSLALPLESEGGSHAVFDCTIPATTQYKTWSEPPELKLKKERTPSSSSSSLPVHVAPPPPQRVMASTGESPETTSSKNLAMKTQGFNVSLISDMDFYHKNILLGSEVACAPLDEDLHFYWLQGECCNMNLGLQNIEMPEYYDPLYDSSDYSIVDQGLFIA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2930 549 SUPERFAMILY Homeodomain-like 237 296 IPR009057 -
Sto3g2930 549 SUPERFAMILY CheY-like 82 190 IPR011006 -
Sto3g2930 549 SUPERFAMILY CheY-like 16 44 IPR011006 -
Sto3g2930 549 Gene3D - 17 211 - -
Sto3g2930 549 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 292 IPR006447 GO:0003677
Sto3g2930 549 MobiDBLite consensus disorder prediction 300 319 - -
Sto3g2930 549 Pfam Myb-like DNA-binding domain 241 291 IPR001005 -
Sto3g2930 549 ProSiteProfiles Response regulatory domain profile. 18 173 IPR001789 GO:0000160
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 42 - -
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 441 530 - -
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 83 431 - -
Sto3g2930 549 SMART REC_2 17 169 IPR001789 GO:0000160
Sto3g2930 549 CDD REC_typeB_ARR-like 19 173 - -
Sto3g2930 549 Pfam Response regulator receiver domain 83 168 IPR001789 GO:0000160
Sto3g2930 549 MobiDBLite consensus disorder prediction 421 465 - -
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 83 431 IPR045279 GO:0009736
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 42 IPR045279 GO:0009736
Sto3g2930 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 441 530 IPR045279 GO:0009736
Sto3g2930 549 Gene3D - 235 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2930 Sto-Chr3 34000338 34005760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2930 11 312 Response Regulator Gene Family AT2G25180 47.712 1.11e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto3g2930 Response_reg 1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2930 - K14491 gmx:100806394 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2930 3 34000338 34005760 Sto3g2930 3 34000338 34005760 ECH