Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2908 ATGGTAAGAGAAAACCCTAACGGCGAACTATCTACGGAGGAGAAAGACCACGTTGAAAGAAGCAACAAGAAGGTCAAGACTGGTGGAGAGGTGGCAGAGAGCTACGGTGTTGTTTCGAACGTGGAAGCACGGGACGATACAATGATGGTGGGTATTGAGATTCACCATGAAGAACAAGGGGCCACCTATAAGGATAAATTACGGGGTACGATGGCAGGAGAACACGTTGGAGAGATCAGTATGGCCGATGAGTTGGAAGAATGGCATCGCCCTTGGATGAGGACTCTCTTGGTCAAACTAATGGGAAAGTCGCTAGGAGTGGCTTTCATGAAGACAAGGATCGAGAGGTTGTGGAGCAAGACATGGAGTGTTCAAATTATCGACCTTGAGAACGGTTTCTTTGCCGTTACCTTCACAAGCCAAGAAGACTTCACGCATGCCTACCAAGAAGGCCCGTGGTTGATCGCTGACCATTATCTCATCGTGCAGAAGTGGAAACCGAATTTTGACCCGTATGCGATGTTGGAGAAAACCCGTATAGTAGCGTGGATACGAGTGCCGGGACTACCATTAGAGTACTATAATGTGAGATGCCTTCGGAGGGTTGGTGACTTGATAAGGAAAACTTTAAAGGTGGACCAAAATACGTCTCTTACCAGCAGAGGGAAGTTCGCAAGGATTTGCGTGGAAATCAATCTCAAAAGGCAACTTGTCCCCCAAGTGGAAATCTGTGGACGTAATTATCGTGTTGAATATGAAGGGCTGCATATGATTTGCTTCTTCTGTGGGAAGTACAGACACATAAAGGAAGCTTGTTGTATGCTGAAGAAGAACCAGGAGGGGAGTGATGATGGTGAGATGAGACAAACAGGTCCTCAGAAGGAGGGTGATAAGAGAGAGGGGGATGCAGGTAGCTTACCTTCTGAAGAAGCTATAAAGGAAGGAACGTTTGGACCATGGATGACGGTTACCAAGCCTGTTAGGAGAAGGATGAACAACCCTAAAAGGATGGATGCGAACATGGAGGAACAGGAGGAGGCATCGGAACCAAATCAGAATGGTGCAAACGCGAGTAGACCGGTGCTGAAGGAGATTACGAACAGACGAGATAGAGGTGGCATGACGGAAGGAGGAAGCGGGAAAGGCGCCACTAAGCCTCGTGACATAGCGCCAGTGTCTAGTCAGAAACAAAGCGAGGCCCAGCAAGGTGTCATAATTGTGGCAAGGCCGAGAATGCCTGGCAAGGCACCATTAGCAACTAGTACTCCTAATGGTAAGGAAGACCGCGGTTCGAACCTAATCCAGGGCATTACCAACGGAAGTAGTAATACAGGCCTTAGCCTGAAGGGAAAACCTGAATTGAGAAAGCCACCGGAAAAAAATACTCCTACCTACTGGACCGAAAATATTGACAGTAGGATGGAGGTGGGGCAGGATAATGATGAGAGTACAATTCATATGGATTGCGAAATGTCGAGCGATATGGTTATTTATGGGGGAACGGGAGCTCGTGGCTTCTCAACCCTTGTCCGTGATATTAGATCCCATTATAAGTTTAACTTTCTTGCTCTTGTTGAGACTCACCAACACAGGGAGAATGCCAGAAGGATTATCAATAGAATGGGTTTCACTCACAGTGAAGTCGTGGAAGCTAATGGGCATGCTGGAGGAATATGGTGCATGTGGAGTGAGAACGGTTTCACAGTGCAAACCTTAGTGAAACACGAGCAACTTATTAACTTCAGAATCTCTAGTGCGTTGTTGCAATGGTATTTCATTGTGGTGTATGGCAAGCCGCAACTGCATCTTAGAGGAAACCTATGGTCTAACCTAGACAATATTGGTGCCAGCATGCAAGACCCTTGGTGTATAACAGGAGACTTTAATGCTTTCGTGGATGATTCTAAGAAGTTTGGCGGAAGCCTGTATGGCAGTAGGCCTGACATGCAGTTTATAGAATGCATTTCGAGGAATTGTCTCATTGACCTTAGGTACTCGGGTGCGGGTACACATGGAAGAGAGGATCGGTGGCGGCTCGATTGGATAGAGCGTTGTCTAATGAAGCATGGAGGTTGTAGCACCCCGAAGCTTCGGCGTGGAGATCGGGTGGCAACTGGGAGGAAGTTGTCAACGAGTTCCAAGAGAAAGTTAATACTTGGAACCGTGAAGTCTTTGAAATCACGTGCCCAGTGGATTATAGAAGGAGATTGCAATACACGTTTCTTCCATACTACTACCCTTATTCGTCGCAAGAGGAATAAGATTGAGGCGCTCCGGGACGATCATGGCAACTACTCCGACCCAGGTATTACAGGATGTTTCCCAACTGTTCCTGAGGACGAGTTAGAAGCATGCTCGAGGATGATTACCATGGAGGAGCTAAGGGAGGCTATCTTTAGTATGGGTCCTTTCAAATCCCCGGGGCCGGATGGATTGAACCCTGTCTTCTTTCAAAGTCAATGGGGAATAGTTAGCAGTTCGGTGTATGATATGGTTCGCTCAATTTACCAGAATCCGGTCTTGATTGAGCACATAAATCACACTTTGATTGTCTTAGTCCCGAAAACAGCGAGACCTGAATGTTTGAAAGACCTTAGACCCATAAGTCTTTGCAACGTCATCTACAAAGCAATTACGAAAGTGCTTGCTAACCGTATTAAGGGTATCATGCCCTTGCTTGTGGCGACTAATCAGTGTAGTTTTGTGCCTGAACGTCATAGCACGGATAATGTAGTGGTTATTCAGGAAGTGGTTCACTCCATGAGGTGCATGAAGGGCAAGAAAGGCCTTATGGCTATAAAGATTGACTTGGAGAAAGCCTATGATAGAATTAGCTGGGATTTTGTTGTAGACACTTTGAAGGAGGTTGGGTTTGGGGACACCTTTATGAACCTCATCCATCACTGTCTCATAACGCCGTCACTACAAATTCTTTGGAACGGCGGAAAAACTGATAGTTTCAAGCCGTCGAGAGGCATCCGCCAAGGAGATCCTATCTCTCCGTACCTATTTGTTCTTTGTATAGAGCGGCTGGCGCACATCCAGAGAGCTATTGGAAGTGGGGATTGGAGGCCTATTAAACTCGGAAGGGAGGGTCCCCCGATCTCGCAcctattttttgccgatgatctTGTTATTTTTCTTGAAGCCTCAATGAACCAAGTAGACATTGTCAAACGTGTTCTGAATGACTTCTGTTCAACATCGGGGCAAAAAGTAAACAAGAATAAGGCTAGAGTATTCTTCTCGAAAAATGTTGGGCATACTCGGGTTGAAGAACTGAGCCAAgctcttggatttgagtatacAGGCGACTTAAGGAGTTATCTTGGAGTCCCAATCCTACATCAGAGAGTGAATAAGAGTACCTATAACTATATCCTAAAAAGCGTCCGGAACAAGCTATCATCTTGGAAAAGCAACTGTCTATCTCTTGCAGGCCGTGCGACTCTCGTTAAATCAGTTACGTCAGCAATTCATGTGTACTCCATGCAGTCATCAGTTATACCATCAAGTGTATGTTCGGAGTTAGAGAAAATAAATCGGAGTTTTCTTTGGGGAAGCACTACCAATCAGAGAAGGATGCATATGGTGGCGTGGGAGAAGGTTTGCACTCCTAAGAGTTGCGGTGGCCTGGGCATGCGACACATCAAGGAACAAAAGAATGCCTTGATAATGAAGTTAGGATGGGGTCTGGTGGAGCATAAGGATTCATTATGGGCCCAGGTTCTAAGGGGCAAATATAGATGTGGTAAGGATACAATACCCAAGACCCTGAAGGAAGTTGCGTTGGGCCCTCTGACTATGCAAGACCTAGAAGCTAAACTTAATGAGTTTCTAACACCTTCGAGAGGGTGGGATTGGAGCAGGTTTGAGCACCTTCTCCCGGATGACATTTTTCTCAAACTCTCTTGTGCGATGCCTCCAAATGCCTCTAGGAGTGAGGATAGAGTCGCGTGGCGATTTTCTAAAGATGCTCGAAAGAGAAGGAACCTGACGGATTGTGACCTGTGCCCAAGGTGTCAAAGGAGGAGTGAGGACTTAATGCATACTCTTAGGGATTGTGATCTGGTAAGAACAGTGTGGATGAGGCTGGTGAATCCATGCCACTGGCAGATCTTCTTTGACTCAAATATGGTTGAGTGGCTAGAGATGAACCTGCACCGAAAATTGGGCAGATATGCTAAGGATTGGAGTGTGGTGTTCGCAACCGCATGCTGGCACATATGGAAAGCAAGAAACACGAAAGTTTTCGACCATAGGCATGCGGATACAGGGGACCCCGTGATGTGTATTCTACAGACAGTTCGAAGGACGGACCACGCTTTTGAGTCATCTGTTGTGTACAAGAACTCGCATAAGAATAGAACACCACAACTAATACTCTGGCAGAAACCTCCGACAGGGTGGGTGAAGGTGAATGTTGATGGAGCAAGAAAAGAACAGAATGGTATCGCTGCTTGTGGCAGGGTGGTTAGAGATGATAATGGAAGTTTTGTTGCTGGATTCATGAAGAAGCTTGATGATTGCAGCATTCTTGCAGCTGAATTATGGGGCATAGCCTGCGGTTTGGAAGTCGCATGGGATATGGGCTTTAGACGTGTTAGCCTGGAAGCTGATTCTCTGACCGCGATTACAATGGTGCAGAATCATGTTGAAGATAGCCACCCTTGTGCAAATCTGATCCACAAGATCCATTCTTGGTTGAGTCAAGATTGGGAGGTGTCCATTTCCCACGTTTTTCGAGAAGGCAACCGTCTTGCTAACGAGATTGCTAAGAGAGCCATCCATAGTGAAACTGGATTCAAGATCTTCCACGAGCAGGATAATGCCCTGGCTAGACTTCTGCATGAAGGCTCGATCGGCGTAGGCACACCAATCAACCGTTTGGATCGATCAGATGAAGTAACTTTACGTGAACGGTTAATACCATACCGTAGGAAGGGTATAACTGGAATTGGATgtcctgatatatatatatatacctcaacGTCAAATTTCCCGCCATTTCTCTTGATAACTCATTGGCACACTCACATCAGAGAAACCCTAGAACTGGAGCAGAAAGACATGGCAATGGAAGAGGAAATTAAAGCAGAATTCAGAAAAAGCGGGTTTGGCTTTGACGATGAAGAAGAAATACTAAAGAAATGTCTGCCGTTTTGCATAAACTACAGTCTCAAGCCTTCAGATCTCGTTTCGAGTTGGGAGGTTTATTATCTgaacagACAGTTGAATGAACCAACAGTACAAAGTGCCGAAATGGATGGGTTTTTGTTGCACCTACAAAATGAGCAGAAAGAAGCTGTTATCAAGGAGGAAATTGATTTACATATTTACTCAAGTAGAGATGTTGAAATCCCCGCATTAGCAATTGAAATAggGATCTTAAATAACGATGATGATGTTTCAAAGGATAATGCTCCTGGCACTCCAACAGACCATCAACAAGATCTTTACTCGCCTGCATATGATTCAACCTCTCTAAATAGTGGAAATATCTTACATTCTGGAAAATCACCAAAACTTGTGACACCATTTTCTAAGCGAACAAATAAGTTTGATGTGAAATTCAGCATCAACAACATGCCTGATCTAGAAAATGGAAAACAAGATCCTGGTCATGAGAATGATGAGGATGACATTGTCAGGAAGATTATTCCACGCAAAAGGTGCTCATTGATGGTTCATGAATCAGGGCCCAAATCAGGTTGTAGATTCATGTACGACAAGATTGAAGATAGGTTTAATGCGTTAGAAAATCGAATAAAGAAACATACAAGGGCACTTGTAGCTTCTGGGCTCTATGAAGAACCAATGGACCCTATATTTGCTTCACAGAGAAGCATTTTCACTGTTGGCATGATTTGTTGTGATGGAGAAGGCCGTCTAAATGAGAAGTCTGTCATGCTGCAGAGCAGTACTGAGCATTCTGGAGGGCAACGTGTTCGCCTAGAATTACAACAACTAAGCCACTTTTCAGTTTTCCCAGGCCAGATAGTTGGTATTCAAGGCCATAATCCTAGTGGCCACTGCCTAGTTGCATCAAAATTAGTGGATTCTGTACCTTCTACAGTTGTTGATAATGAGAATTTAAACCCGGCAAAGAAACCAGCATTCGATAAGGATAATCAGACAACTGACCTGCCTTGCAAGCAGAGAGAGTTATCAATGATTGTTGCAGCAGGCCCTTTTACTACAACAGACAACTTGTTGTTTGAGCCTCTTGCTGAACTGCTGGCATATGCAAAGAAAAGACAGCCACAGTTGATCGTATTGCTGGGACCATTTATTGATACTGAGCACCCGGACATTAAAAAGGGAACCACAGATAGGAGCTTTGATGAAATATTTCATGTTGAAATCCTCAGAAGGTTGGAAGACTATGTAGAATGTATGGGATCTGCAGCACGCGTCCTTCTTGTACCATCTATACGAGATGCTAACCATGATTTAGTTTTCCCTCAGATTAGTGGTCCAAAGACTAATGTCAACCATTGTTTCCTTCAGCCTGCATTTGATATCAATCTACCCAATATCAAACCTCAGATTGCCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGTCTGTGGTGCATCAGATGTACACAGTTATCTGCAAGGACATTCCAGTCAAGGTTGGTTGCTGCACTGTGGATATTCTCAAGCAACTCAGTGGGGAGGAAATATCACGGATTTCAGCAGATGGAAAACCTAGTGATCGCATGAGTAGAGTTGCAAACCATATTCTTAAACAACGAAGCTTTTATCCTCTTTATCCGCCGGCAGAAAATGTTCCTTTGGACTTTTCTCTTGCTTCAGAAGCTCTTCAACTCTCCATGGTTCCAGATGTTCTCATTTTACCTTCAGACATCAAATACTTTGTTAAGGTGCTTCATGAAGAAAGTGAAGAAGGGAATCAAATGAAATGCATTTCTATCAACCCAGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGCCGAGCTAGACTTCTATGGGGGTCCTGACACAATCAATGCTTCAATTGTTGGCATATGA 7047 0.4436 MVRENPNGELSTEEKDHVERSNKKVKTGGEVAESYGVVSNVEARDDTMMVGIEIHHEEQGATYKDKLRGTMAGEHVGEISMADELEEWHRPWMRTLLVKLMGKSLGVAFMKTRIERLWSKTWSVQIIDLENGFFAVTFTSQEDFTHAYQEGPWLIADHYLIVQKWKPNFDPYAMLEKTRIVAWIRVPGLPLEYYNVRCLRRVGDLIRKTLKVDQNTSLTSRGKFARICVEINLKRQLVPQVEICGRNYRVEYEGLHMICFFCGKYRHIKEACCMLKKNQEGSDDGEMRQTGPQKEGDKREGDAGSLPSEEAIKEGTFGPWMTVTKPVRRRMNNPKRMDANMEEQEEASEPNQNGANASRPVLKEITNRRDRGGMTEGGSGKGATKPRDIAPVSSQKQSEAQQGVIIVARPRMPGKAPLATSTPNGKEDRGSNLIQGITNGSSNTGLSLKGKPELRKPPEKNTPTYWTENIDSRMEVGQDNDESTIHMDCEMSSDMVIYGGTGARGFSTLVRDIRSHYKFNFLALVETHQHRENARRIINRMGFTHSEVVEANGHAGGIWCMWSENGFTVQTLVKHEQLINFRISSALLQWYFIVVYGKPQLHLRGNLWSNLDNIGASMQDPWCITGDFNAFVDDSKKFGGSLYGSRPDMQFIECISRNCLIDLRYSGAGTHGREDRWRLDWIERCLMKHGGCSTPKLRRGDRVATGRKLSTSSKRKLILGTVKSLKSRAQWIIEGDCNTRFFHTTTLIRRKRNKIEALRDDHGNYSDPGITGCFPTVPEDELEACSRMITMEELREAIFSMGPFKSPGPDGLNPVFFQSQWGIVSSSVYDMVRSIYQNPVLIEHINHTLIVLVPKTARPECLKDLRPISLCNVIYKAITKVLANRIKGIMPLLVATNQCSFVPERHSTDNVVVIQEVVHSMRCMKGKKGLMAIKIDLEKAYDRISWDFVVDTLKEVGFGDTFMNLIHHCLITPSLQILWNGGKTDSFKPSRGIRQGDPISPYLFVLCIERLAHIQRAIGSGDWRPIKLGREGPPISHLFFADDLVIFLEASMNQVDIVKRVLNDFCSTSGQKVNKNKARVFFSKNVGHTRVEELSQALGFEYTGDLRSYLGVPILHQRVNKSTYNYILKSVRNKLSSWKSNCLSLAGRATLVKSVTSAIHVYSMQSSVIPSSVCSELEKINRSFLWGSTTNQRRMHMVAWEKVCTPKSCGGLGMRHIKEQKNALIMKLGWGLVEHKDSLWAQVLRGKYRCGKDTIPKTLKEVALGPLTMQDLEAKLNEFLTPSRGWDWSRFEHLLPDDIFLKLSCAMPPNASRSEDRVAWRFSKDARKRRNLTDCDLCPRCQRRSEDLMHTLRDCDLVRTVWMRLVNPCHWQIFFDSNMVEWLEMNLHRKLGRYAKDWSVVFATACWHIWKARNTKVFDHRHADTGDPVMCILQTVRRTDHAFESSVVYKNSHKNRTPQLILWQKPPTGWVKVNVDGARKEQNGIAACGRVVRDDNGSFVAGFMKKLDDCSILAAELWGIACGLEVAWDMGFRRVSLEADSLTAITMVQNHVEDSHPCANLIHKIHSWLSQDWEVSISHVFREGNRLANEIAKRAIHSETGFKIFHEQDNALARLLHEGSIGVGTPINRLDRSDEVTLRERLIPYRRKGITGIGCPDIYIYTSTSNFPPFLLITHWHTHIRETLELEQKDMAMEEEIKAEFRKSGFGFDDEEEILKKCLPFCINYSLKPSDLVSSWEVYYLNRQLNEPTVQSAEMDGFLLHLQNEQKEAVIKEEIDLHIYSSRDVEIPALAIEIGILNNDDDVSKDNAPGTPTDHQQDLYSPAYDSTSLNSGNILHSGKSPKLVTPFSKRTNKFDVKFSINNMPDLENGKQDPGHENDEDDIVRKIIPRKRCSLMVHESGPKSGCRFMYDKIEDRFNALENRIKKHTRALVASGLYEEPMDPIFASQRSIFTVGMICCDGEGRLNEKSVMLQSSTEHSGGQRVRLELQQLSHFSVFPGQIVGIQGHNPSGHCLVASKLVDSVPSTVVDNENLNPAKKPAFDKDNQTTDLPCKQRELSMIVAAGPFTTTDNLLFEPLAELLAYAKKRQPQLIVLLGPFIDTEHPDIKKGTTDRSFDEIFHVEILRRLEDYVECMGSAARVLLVPSIRDANHDLVFPQISGPKTNVNHCFLQPAFDINLPNIKPQIASLTNPGIFEANESVVHQMYTVICKDIPVKVGCCTVDILKQLSGEEISRISADGKPSDRMSRVANHILKQRSFYPLYPPAENVPLDFSLASEALQLSMVPDVLILPSDIKYFVKVLHEESEEGNQMKCISINPGRLAKGEGGGTFAELDFYGGPDTINASIVGI 2348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2908 2348 MobiDBLite consensus disorder prediction 346 360 - -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 1801 1822 - -
Sto3g2908 2348 Pfam Reverse transcriptase-like 1474 1595 IPR002156 GO:0003676|GO:0004523
Sto3g2908 2348 MobiDBLite consensus disorder prediction 1 26 - -
Sto3g2908 2348 Pfam Domain of unknown function (DUF4283) 91 229 IPR025558 -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 8 26 - -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 424 448 - -
Sto3g2908 2348 Pfam DNA polymerase alpha/epsilon subunit B 2059 2298 IPR007185 GO:0003677|GO:0006260
Sto3g2908 2348 Gene3D - 1469 1597 IPR036397 GO:0003676
Sto3g2908 2348 Gene3D Endonuclease/exonuclease/phosphatase 500 688 IPR036691 -
Sto3g2908 2348 SUPERFAMILY DNase I-like 510 682 IPR036691 -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 1804 1822 - -
Sto3g2908 2348 Coils Coil 1909 1929 - -
Sto3g2908 2348 CDD RNase_H_like 1473 1593 IPR044730 -
Sto3g2908 2348 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 834 1114 IPR000477 -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 279 307 - -
Sto3g2908 2348 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 854 1104 IPR000477 -
Sto3g2908 2348 MobiDBLite consensus disorder prediction 279 465 - -
Sto3g2908 2348 CDD RT_nLTR_like 847 1114 - -
Sto3g2908 2348 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1693 2335 IPR016722 -
Sto3g2908 2348 Gene3D - 2239 2343 - -
Sto3g2908 2348 Gene3D - 2039 2231 - -
Sto3g2908 2348 SUPERFAMILY DNA/RNA polymerases 786 1085 IPR043502 -
Sto3g2908 2348 Gene3D - 1691 1757 IPR043034 -
Sto3g2908 2348 SUPERFAMILY Ribonuclease H-like 1469 1597 IPR012337 -
Sto3g2908 2348 Pfam DNA polymerase alpha subunit B N-terminal 1713 1928 IPR013627 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2908 Sto-Chr3 33752460 33766351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2908 1691 2348 Core DNA Replication Machinery Family AT1G67630 55.522 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2908 K02321 - qsu:111985472 885.56