Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2857 ATGATGGATGCTGCTGAGGTTGAAGAAAATCTGTTCGCAGCAAGTGATGCCAAGCTACACGGGGAAATGTGCAAGAttctttcaacaatttattgcaaaattttgtcaatttttcCTTCTTTGGAAGCAGCTAGGCCTAGGAGCAAATCTGGTATTCAGGCATTATGTTCATTACATGTAGCCCTTGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATTTGCTCTTGAAGATAGCCTTAAGCAGGTGGACGATATTGTTCCTCAATCTATTGGGTGTCAGATTCAGAAGATTGTGAATGAACTTCAGAGTGTGTCTTTTGCACTTGACCCTTCAGAGAAGCAAATTGGTGTTGATCTAATTGCATTACTTCAGCAGGAGGGGAGAAAATTAAGTAACTCTAATGATGGTAGTGAGCTAGAATGTTTCCACCAGGCTGCTACTAAACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAGCTCATAGAAAAAGCTAGAGCTGAGGAAGACAAGAGGAAGGAAGCAATTGTTGCATATCTTTTACATCTTATGAGAAAATATTCCAAGTTATTTAGAAATGATCTATTAGATGATAATGATTCACAGAGTTCTGCTCCTTGTTCTCCCACTGTTCAAGGATCTATTGAGTGTGCTTTTCTTGGTGGTCAATGTGAGACCATTGACAGACAGTCTTCACATAGttcttcctttaattttaatCCATATAATAGAAAATCAGGGCAGATGCCCCTTCCGCCTGAAGAATTAAGGTGCCCAATTTCTCTGCAGCTTATGTATGATCCTGTCATCATTGCTTCCGGGCAAACATATGAAAGAGTTTGCATTGAGAAATGGTTTAGTGATGGGCATAACACCTGTCCGAAGACTCAACAGAAACTTGTGCATCTTTCTTTGACGCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGCGAACAGAATGGAGTTCCTGCTCCTCATGGCCCTCCTGAATCTCTTGATCTTAACTATTGGAGATTGGCATTATCAGATTCTGACTCAACAAATTCAAGATCTGCAAACAGTTTTAGCTCAAGCAAGTTGAAGGGTGTCAAGGTGGTTCCCCTAGAAGAGAGCAGAATCTCAGAAGAAGCTAGAGTAGATAAAACTGAAACTGAAAATGTGTCTAAACAGGAAAAAGATCCTGAACAATATATTGGGTTTCTGAAAGTCTTGACTGAAGAAAACAATTGGACAAGTAAGTGTAAAGTGGTGGAACATTTAAGGATGTTATTGAGGAATGATGAGGAAGCCAGGACTTATATGGGGGCTAATGGGTTTGTTGAGGCACTTTTGCAGTTTTTGCAATCTGCTGTATCTGAAGGGAATCTGACAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTAAATAACAACAGAAATAAGGCCGTTATGTTATCAGCAGGAGTATTATCCTTGTTAGAGGGAATGATTTCTAAGTCCAGTTCTTACGGCTGTGCAACGGCCCTCTATCTGAATCTTTCTTGCCTCGAAGAAGCCAAGACTATGATTGGAACTAGTCAGGCTGTCAAGTTCCTAGTAAATCTCCTTCAAGCTAACACTGAGATTCAATGCAAGCAAGATTCCCTCCATGCACTCTATAATCTCTCCACTGTCCCCTCCAACATTCCAAACCTTCTCTCATCTGGCATCATAAGTAGCCTTACATCCCTTCTTGCAGGAAACGGTGATTGCATTTGGACAGAAAAATGCATAGCTGTTTTGACCAATTTGGCTGCTTCTCATATGGGAAAGGAGGAAATGATCTCAACTTCAGGACTCATCGGTGCATTGGCCGAGAAATTGGACTCCGATTTGCTCCTAGAGCAGGAGCAAGCAGTGTCTTGTCTATTCATTTTgtgtaatgagaatgagaaatgTAGCCACATGGTCCTGCGAGAAGGTGTAATACCTGCATTGGTGTCAATTTCAGTAAATGGGACTTCAAGAGGAAAACAGAAAGCTAGAAAACTCTTGATGCTCTTTAGACAGCAGCGACAACAAGACCCTTCACCTGTTAAGACACAATTGCTTCCCCTTCCCCCTGTAACAACTAGTGATTCGGCTAAGACTCCTCCTCAAGAAGCGAGACCACTTTATAAGTCAATGTCCATAAGAATGATTGGGAAGCCTCTTAAATTTTTCTGGAAAAGCAAGAGCTATTCTATTTCCCAGATTTAA 2319 0.4019 MMDAAEVEENLFAASDAKLHGEMCKILSTIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKFALEDSLKQVDDIVPQSIGCQIQKIVNELQSVSFALDPSEKQIGVDLIALLQQEGRKLSNSNDGSELECFHQAATKLGITSSRAALTERRALKKLIEKARAEEDKRKEAIVAYLLHLMRKYSKLFRNDLLDDNDSQSSAPCSPTVQGSIECAFLGGQCETIDRQSSHSSSFNFNPYNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQKLVHLSLTPNYCVKGLVASWCEQNGVPAPHGPPESLDLNYWRLALSDSDSTNSRSANSFSSSKLKGVKVVPLEESRISEEARVDKTETENVSKQEKDPEQYIGFLKVLTEENNWTSKCKVVEHLRMLLRNDEEARTYMGANGFVEALLQFLQSAVSEGNLTAQESGAMALFNLAVNNNRNKAVMLSAGVLSLLEGMISKSSSYGCATALYLNLSCLEEAKTMIGTSQAVKFLVNLLQANTEIQCKQDSLHALYNLSTVPSNIPNLLSSGIISSLTSLLAGNGDCIWTEKCIAVLTNLAASHMGKEEMISTSGLIGALAEKLDSDLLLEQEQAVSCLFILCNENEKCSHMVLREGVIPALVSISVNGTSRGKQKARKLLMLFRQQRQQDPSPVKTQLLPLPPVTTSDSAKTPPQEARPLYKSMSIRMIGKPLKFFWKSKSYSISQI 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2857 772 Gene3D - 399 718 IPR011989 -
Sto3g2857 772 MobiDBLite consensus disorder prediction 711 742 - -
Sto3g2857 772 PANTHER U BOX DOMAIN-CONTAINING 2 730 - -
Sto3g2857 772 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Sto3g2857 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Sto3g2857 772 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Sto3g2857 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
Sto3g2857 772 SUPERFAMILY RING/U-box 279 355 - -
Sto3g2857 772 MobiDBLite consensus disorder prediction 711 738 - -
Sto3g2857 772 SMART arm_5 585 626 IPR000225 GO:0005515
Sto3g2857 772 SMART arm_5 458 502 IPR000225 GO:0005515
Sto3g2857 772 SMART arm_5 543 584 IPR000225 GO:0005515
Sto3g2857 772 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Sto3g2857 772 SUPERFAMILY ARM repeat 431 710 IPR016024 -
Sto3g2857 772 CDD RING-Ubox_PUB 285 327 IPR045210 -
Sto3g2857 772 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 730 - -
Sto3g2857 772 Coils Coil 177 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2857 Sto-Chr3 33197097 33201207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2857 2 769 U-box Gene Family AT1G24330 64.994 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2857 - - gmx:100814944 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2857 3 33197097 33201207 Sto3g2857 3 33197097 33201207 ECH