Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2775 atggGAAGGGGACGAGTTGAGTTGAAGAGAATTGAGAACAAGATCAATAGGCAAGTGACCTTCGCGAAACGAAGGAACGGACTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTCTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAAAGGTACCAGAAATGCAACTATGGAGCGCCTGAGCCTAATGTTTCTACAAGGGAAGCTTTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAACGATCCCAAAGGAATCTCATGGGAGAAGATCTTGGACCTTTAAGCAGCAAAGAGCTTGAGTCACTTGAAAGACAGCTTGATTCTTCCTTGAAGCAGATCAGATCAACACGGACACAATTTATGCTGGATCAACTCTCTGACCTTCAACGTAAGGAACACTTGCTAGGTGAGGCAAATAGGTCGCTTAGACAAAGGTTGGAGGGGTATCAAATAAATCCACTCCAATTGAATCCAAGTGCTGAAGAAATGGGATATGGGCGGCAGCCACATCAACCTCAGGAAGATGGCTTCTTTCATCCTTTGGATTGTGAGCCAACTTTGCAAATTGGATACCAGGCTGATCCAGTATTAGTGGTGACAGCAGGCCCAAGCGTGAATAATTACATGCCGGGATGGTTACCATGA 726 0.4518 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLGEANRSLRQRLEGYQINPLQLNPSAEEMGYGRQPHQPQEDGFFHPLDCEPTLQIGYQADPVLVVTAGPSVNNYMPGWLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2775 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto3g2775 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 Coils Coil 126 146 - -
Sto3g2775 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Sto3g2775 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Sto3g2775 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto3g2775 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Sto3g2775 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto3g2775 241 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Sto3g2775 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 225 - -
Sto3g2775 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2775 Sto-Chr3 32444003 32451275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2775 1 241 MADS-box Gene Family AT1G24260 76.016 3.59e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto3g2775 K-box 4.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2775 3 32444003 32451275 Sto3g2775 3 32444003 32451275 ECH