Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2709 ATGAAATGCATAGTTTTTGTTAATAGAATAGTTACTGCAAGATCCTTGTCATACATACTACAACAGCTCAAAATTCTAGCATTTTGGAGAAGTGATTTTCTGGTAGGAGTTCATGCTGGACTGAAGAGTATGTCGCGAAAGACTATGAATGTTATTCTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGGCTAGATATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCAAGCTTTATACAGTCCAGAGGTCGTGCGCGGATGCCTCAGTCAGAATATGCCTTTTTGGTGGACAGTGGCAACAGGAAGGATATGGACTTAATTGAAAGTTTTAAGAAAGATGAAAACAGAATGAACATGGAAATTACATTCCGCACTTCCAATGATACATTTATAATCCCTGAGGAAAGAATTTACAAAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGCGTATAGTGTCTCGTTGCTTCACCTGTTTTGTTCCAAGCTTCCACATGATGAGTATTTTGATCCCAagccaaaatttttttattttgatgatcTAGGGGGAACTGTCTGTCACATAACGCTCCCTTCCAATGCTCCCATACATCAGATTGTTAGTGCACCCCATTTTTCTATGGATGCTGCTAAGAAGGATGCTTGTTTGAAAGCAGTCGAGGAACTGCATAAATTAGGTGCCTTGAATGATTGTCTGCTGCCAAAACATGATGACCCACAGGAGCAGGTTCCAGACTCTTTTGATTCAGATGTATATGAAGatgaaaatttacGGGGAGAGTTACATGAGATGTTAGTTTCGTCTGTCCTTAGACAAGCATGGATAAACAAGGATAACATTGTCCATCTTAACTCTTACTTTTTAAAACTTAGACCCTCTCCAGAGGATCGGATCTATAAAGAGTTTGGTCTATTTATAACGACAAGTCTTCCTGTGGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGAACTGTGATGACAAAATTTGTTCCATTTGGAGTTGCCAAATTTGACAAAACTGAGATCAAGATGGCACAGCATTTTCAGGAGATGTTCCTGAAAATTATTCTTGACCGATCAGAATTTGTTCCTGAATTTGTACCCTTGGGTAAGAATGATATCTTTCAAGCAAGCGCATCAACCTTCTTTCTTTTGCTTCCGGTCGTATtgcaaaacaataaaaatactATGACAGTAGATTGGAATACTGTGAAGAGATGTCTTTCTTCACCAATATTCAGGCATCCAGAAGATattgtaaatcataaaccatttCCTATGCATTCTAACTTGCAACTGGCTGATGGTTATAGAAGTGTAAGAGATCTTGAGAATAGTTTAGTATATGCTCCACATAAGAAGCTGTTTTATTTTGTTACTAATATTGTTCATGAAAAGAATGGACTGAGTCCTTACGAAGATTCTGGCAGTTCAAGCTATGTGGATCACTTGATTGAAAAATTTTCCATTCATCTTAAATACCCTGAGCAACCCCTTCTCCATGTAAAGCCCCTATTCAATTTGCACAACTTGCTTCACAACCGAAAGCAAGACGATACAGTTATCAGGCCTTCAACCTTTGTCCTGAACTAA 1653 0.3757 MKCIVFVNRIVTARSLSYILQQLKILAFWRSDFLVGVHAGLKSMSRKTMNVILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNRKDMDLIESFKKDENRMNMEITFRTSNDTFIIPEERIYKVDSSGASVSSAYSVSLLHLFCSKLPHDEYFDPKPKFFYFDDLGGTVCHITLPSNAPIHQIVSAPHFSMDAAKKDACLKAVEELHKLGALNDCLLPKHDDPQEQVPDSFDSDVYEDENLRGELHEMLVSSVLRQAWINKDNIVHLNSYFLKLRPSPEDRIYKEFGLFITTSLPVEAEKLELDLHLAHGRTVMTKFVPFGVAKFDKTEIKMAQHFQEMFLKIILDRSEFVPEFVPLGKNDIFQASASTFFLLLPVVLQNNKNTMTVDWNTVKRCLSSPIFRHPEDIVNHKPFPMHSNLQLADGYRSVRDLENSLVYAPHKKLFYFVTNIVHEKNGLSPYEDSGSSSYVDHLIEKFSIHLKYPEQPLLHVKPLFNLHNLLHNRKQDDTVIRPSTFVLN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2709 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 141 IPR001650 -
Sto3g2709 550 Gene3D - 1 138 IPR027417 -
Sto3g2709 550 PANTHER DICER-LIKE PROTEIN 4 1 540 - -
Sto3g2709 550 Pfam Helicase conserved C-terminal domain 2 102 IPR001650 -
Sto3g2709 550 Gene3D Dicer dimerisation domain 163 259 IPR038248 -
Sto3g2709 550 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 168 258 IPR005034 GO:0016891
Sto3g2709 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 119 IPR027417 -
Sto3g2709 550 PANTHER DICER-RELATED 1 540 - -
Sto3g2709 550 Pfam Dicer dimerisation domain 168 253 - -
Sto3g2709 550 ProSiteProfiles PAZ domain profile. 430 544 IPR003100 GO:0005515
Sto3g2709 550 Gene3D paz domain 457 545 - -
Sto3g2709 550 SUPERFAMILY PAZ domain 455 524 IPR036085 GO:0005515
Sto3g2709 550 SMART helicmild6 17 104 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2709 Sto-Chr3 31769799 31773436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2709 2 101 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 6.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2709 K11592 - gmx:100818702 816.609