Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2664 ATGGTGTTTATCTCTAAGACTAGAATTAGTGGTTCGAGAGCTGACAACGTTTTTGCTAGCCTAGGATTCGGTGGCTCATTCAAGGTTGATGCTATGGGCTATGCGGGTGGTCTCTGGATCCTTTGGGACCCCAATGACATGAGGGTGCATGTTCATGACCACACATTTCAAGAAGTCCATGATACTCTGGAGGTCTTTCAATCCTCTAAGATCCCAAAAGAGTGGAATAAGTCTTTGATTTACCTTATCCCAAAAGGCAACAATCCTTCAGACATCCGCAGCTTTCGCCCTATCAGTCTTTGCACTTCTCTATATAAGATAATTTCTAAAATCTTGGGCAATCGCCTAAAATCGTTTATCCCTAACCTCATCTCTTTTCATCAAGGTGCTTTTGTTCTGGGAAGGAAAGCAGTAGATAATACCATTATTGCCCAAGAGTTGACATACTGCCTAAAAAAGAAGCGTGGGGGAAAATGGGGGTGGATGATGATTAAGTTAGATCTGGAAAAGGCGTATGATAAGCTGAATTGGTCCTTCATTTCTGATGTTctgaggaaaatgaatgtccctCCACATGTAGTGAACCTGATTGAGAGCTCTATATCCTCTGTGAATCACTACATTCTCATTAATGGAAATGATGTGCTTCCTTTTTCCCGTACTGATATGAACTCGGTTAGAGCCATCAAAGCAGCCTTGGATTTGTTCCTTGGTAGTTCGGGATTGTCCATAAATGCAGAAAAGATCTACCTTGGTATTCCCCTCAATCTTGGTAGAAGAACtagtgattttaaaatttttgttgatAAGGCAGAAAATTGGAAGGCCAAGTACTTGTTCAAAGCGGTTCCTGTTAATTCCAATTCAGTGTCTATTGATGGCCTTCTTGCTGAGCTTTGGGGTATTACTTTGGGTCTTTCTTTAGCCTGTATTCTTCATTGCAATAAGATTATTGTAGAAGCTGACTCCTTGATTGCtgttaatttggtctctaacatTGAGTTCAATCATGGTGACTCTCATCATTACAAAACTTTGATTGATTCTTGCAGATCTTTCCTTTCTCGTTTTTCAGAGTTCAAGCCTGCAAGGCCAGAGGCTCCGACCTTAGAGTCCATTTTAAGAAATAAGAAATCCCGATGTTATGAAGAAATAAGAAATCCCGATGAAAAAAGCAGGGGTCTGGTTGCCTATGTGGGGCAGAACACTAGGGAGACCGCCTTCGCTATCAGGAAGTTGCCCTTGGCAAAGGCAAAGAGATACTTGGAGGATGTCTTGGCTCACAAACAGGCAATTCCCTTCCGAAGGTTTTGTGGAGGCGTAGGGAGGACAGCCCAGGCAAAGAATAGACACTCTAATGGACAAGGACGATGGCCTGTCAAATCAGCTAAATTCATTCTTGATTTGCTGAAGAATGCAGAGAGTAATGCTGAAGTGAAAGGCTTAGACGTGGATGCTCTCTACATTTCTCACATCCAGGTTAATCAAGCACAGAAGCAAAGGCGCCGCACCTACAGGGCTCACGGAAGAATCAACCCCTACATGTCATCCCCATGCCATATAGAGTTGATATTATCTGAAAAGGAGGAGCCTGTGAAGAAGGAGCCGGAGAGCCAGTTGGCAACAAGCAAGAAGTCCCAAAGCTCTTAG 1650 0.417 MVFISKTRISGSRADNVFASLGFGGSFKVDAMGYAGGLWILWDPNDMRVHVHDHTFQEVHDTLEVFQSSKIPKEWNKSLIYLIPKGNNPSDIRSFRPISLCTSLYKIISKILGNRLKSFIPNLISFHQGAFVLGRKAVDNTIIAQELTYCLKKKRGGKWGWMMIKLDLEKAYDKLNWSFISDVLRKMNVPPHVVNLIESSISSVNHYILINGNDVLPFSRTDMNSVRAIKAALDLFLGSSGLSINAEKIYLGIPLNLGRRTSDFKIFVDKAENWKAKYLFKAVPVNSNSVSIDGLLAELWGITLGLSLACILHCNKIIVEADSLIAVNLVSNIEFNHGDSHHYKTLIDSCRSFLSRFSEFKPARPEAPTLESILRNKKSRCYEEIRNPDEKSRGLVAYVGQNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQSS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2664 549 Pfam Reverse transcriptase-like 293 361 IPR002156 GO:0003676|GO:0004523
Sto3g2664 549 PANTHER 60S RIBOSOMAL PROTEIN L17 401 544 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sto3g2664 549 CDD Ribosomal_L22 401 525 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sto3g2664 549 CDD RT_nLTR_like 77 248 - -
Sto3g2664 549 MobiDBLite consensus disorder prediction 527 549 - -
Sto3g2664 549 Gene3D Ribosomal protein L22/L17 397 549 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sto3g2664 549 SUPERFAMILY Ribosomal protein L22 401 528 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sto3g2664 549 CDD RNase_H_like 295 357 IPR044730 -
Sto3g2664 549 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 83 213 IPR000477 -
Sto3g2664 549 TIGRFAM uL22_arch_euk: ribosomal protein uL22 401 528 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sto3g2664 549 PANTHER RIBOSOMAL PROTEIN L17A 401 544 - -
Sto3g2664 549 ProSitePatterns Ribosomal protein L22 signature. 501 525 IPR018260 GO:0003735|GO:0005840|GO:0006412
Sto3g2664 549 Pfam Ribosomal protein L22p/L17e 401 526 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2664 Sto-Chr3 31104486 31111879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2664 391 549 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 85.093 4.47e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2664 K02880 - cpap:110825807 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2664 3 31104486 31111879 Sto3g2664 3 31104486 31111879 ECH