Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2654 ATGGCGGACGAAGAGAAAGAGAGCTTGATCCGACCAGAATTTCCGATGGGCCGAGTGAAGAAAATCATGAGGCTGGACCCAGATATCCAGAGGGTGAGTTCAGAAGCCTTGTTCCTGATATCGTGCTCCACCGAACTCTTCCTTCAATTCATGGCTAAGAAGTCCGCACAGGTTGCCATTGAGAAGAAGCGCAAGACCGTAAAGCTCGAACACATAAGAATCGCCGTCAAGAGGCACCAGCCAACCAGTGATTTTCTCCTTgattcacttccacttccctctcagCCCGCTAACCCCCCGCCCAAAGATCGGAGCCAATCTTGCTCAGATGCTGCTGATAAGCCACTTCCATTTGGTACTAGCCGCATCGATCGTTTTTTCCGCAAGCCAGAAGGCGAAGTGCCAGAGCCGAGAGATGAGCCTTAG 426 0.4883 MADEEKESLIRPEFPMGRVKKIMRLDPDIQRVSSEALFLISCSTELFLQFMAKKSAQVAIEKKRKTVKLEHIRIAVKRHQPTSDFLLDSLPLPSQPANPPPKDRSQSCSDAADKPLPFGTSRIDRFFRKPEGEVPEPRDEP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2654 141 MobiDBLite consensus disorder prediction 85 141 - -
Sto3g2654 141 MobiDBLite consensus disorder prediction 124 141 - -
Sto3g2654 141 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 130 - -
Sto3g2654 141 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 130 - -
Sto3g2654 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Sto3g2654 141 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Sto3g2654 141 SUPERFAMILY Histone-fold 7 99 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2654 4 134 CCAAT-HAP5 Transcription Factor Family AT5G43250 61.832 1.99e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto3g2654 CBFD_NFYB_HMF 1.7e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2654 - - vvi:100247115 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2654 3 31011959 31012384 Sto3g2654 3 31011959 31012384 ECH