Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2495 ATGCAATTCGCAAAGCTCGATGATTCTCCTATGTTTCGCAAGCAGATACAATGCCTGGAGGAAAGTTCTGAATCTTTGAGAGAGAGAAGTTTGAAATTCTACAAAGGGTGTAGAAAATACACCGAAGGACTTGGGGAGGCATATGATGGGGACATTGCATTTGCAAGTGCCCTGGAAACTTTTGGTGGAGGGCATAATGATCCAATCAGCGTGGCTTTTGGAGGTCCTGTTATGACCAAATTCACTATAGCCCTAAGAGAAATTGGAACATACAAGGAAGTCCTGCGCTCCCAGGTTGAACATATGCTAAATGACAGATTGCTCCAGTTTGTTAATATTGATTTGCATGAGGTCAAGGAAGCACGCAAACGTTTTGACAAGGCTAGCCTTATTTATGACCAGGCTCGTGAAAAATTTCTGTCTTTAAGAAAAGGCACAAAAACTGATGTGGCTACTGCCCTAGAAGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTAGGTTTAATCTGGTTACTGCTTTATCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAGTTGTTGCACCAAATGGAGCCATATATTAACCAgGTCCTAACGTATGCTCAGCAATCTAGAGAAAGGTCCAACTATGAGCAAGCTGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGGTTGATCGAGAGAGCAGGTGGTCTTCAAATGGTTCCAATGGGTCTCCTAATGGAGATGGTATACAAGCCATAGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTTTCAAAGCGTTCATCAAACTTAAGGGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTTTATTACTATCGTAAGCAGTGCAGCAAATCATCTGGTTCCAGTAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTCTTAAGCCGATGGCTATCTTCCCATCATCATGGTGGGGTACATGATGAGAAATCCGTCGCTCATCACACTGTAAACCTGCTTACATCGACAATCAAAGTTGATGCTGACCAATCAGACTTGAGGTTTTGCTTTAGGATTATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCTCTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCTCAGATTCCTGAAAGGTGTTTGCCTGCAAGTCCAATGGGAAGCGGTCATCATAGGTCTGCCAGTGAGAGTAGCTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTAGAAGAATATAAATCAGAGAGAAGTCTTGCTTCTGCATATTTGGAACGTCCCTCAAGAAGCTTGCAGCAGCAGCAGCGATCATGTATTAAAAGCGAGAAGCCAATTGATGTGTTGCGAAGAGTTAGTGGAAATGATATATGTGCCGATTGCGGTGCCCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTCAAAGTCTGGGAACCTTCTGTGATAAGTTTGTTTCAATCTCTTGGGAATACTTTTGCCAACACAGTCTGGGAGGAACTATTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCAACAGGCTTAAACAAGTCCGACAAACCACAGGTGCTTTTCATCAGCAAACCTTGTCAATCGGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCTTAAGCTGAAGGACAGTCAATATCGTCTCTTGGTGGCACAGCAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTACGAGCCAACATGTGGCTCTTCTTTAACCCTTGCCAAAGTTATGCTATTACAAGAGCAGACAAGCCATGATCACAACTCTGCTTCAGCAGGGAACTCATTGGACTGGTCCTCTACTTACCCTTTGAATTTGGTGGGAACAAAAGAAGGTCAGACCATAGATGATCTAGAAGGGTGCACCCTACTTCACCTTGCTTGTGAGACTGCAGACATTGGCATGCTGGAGCTTCTCCTTCAGTATGGTGCAAATATTAATGCAACTGATTTGAGAGGCCAAACGCCACTTCATCGCTGTATTCTCAAAGGCAGATCTACATTGGCAAGATTACTTCTCTCAAGGGGAGCTGATCCTCAAGCTATGGATGAGGAGGGTAGAACACCTATTGAGCTTGCAGCAGAGTCAAATTTTGACGACAACGAGGTGCTTGCTTTATTATCTGATTCAAACGGATGA 2496 0.4255 MQFAKLDDSPMFRKQIQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDVATALEEELHNARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHHRSASESSSFESSDFDHSAVEEYKSERSLASAYLERPSRSLQQQQRSCIKSEKPIDVLRRVSGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANTVWEELLQSRSAFQIDLVPTGLNKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFVLKLKDSQYRLLVAQQIWEAVRANDKKAVYRYIVNYEVDVNAVYEPTCGSSLTLAKVMLLQEQTSHDHNSASAGNSLDWSSTYPLNLVGTKEGQTIDDLEGCTLLHLACETADIGMLELLLQYGANINATDLRGQTPLHRCILKGRSTLARLLLSRGADPQAMDEEGRTPIELAAESNFDDNEVLALLSDSNG 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2495 831 MobiDBLite consensus disorder prediction 441 461 - -
Sto3g2495 831 Gene3D - 285 438 IPR011993 -
Sto3g2495 831 SUPERFAMILY ArfGap/RecO-like zinc finger 501 641 IPR037278 -
Sto3g2495 831 SUPERFAMILY Ankyrin repeat 657 819 IPR036770 -
Sto3g2495 831 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Sto3g2495 831 Pfam Ankyrin repeats (many copies) 741 792 IPR002110 GO:0005515
Sto3g2495 831 Coils Coil 151 171 - -
Sto3g2495 831 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Sto3g2495 831 CDD PH_ACAP 295 432 - -
Sto3g2495 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Sto3g2495 831 SMART ANK_2a 738 767 IPR002110 GO:0005515
Sto3g2495 831 SMART ANK_2a 771 800 IPR002110 GO:0005515
Sto3g2495 831 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Sto3g2495 831 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Sto3g2495 831 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Sto3g2495 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 646 IPR001164 GO:0005096
Sto3g2495 831 Pfam BAR domain of APPL family 6 232 - -
Sto3g2495 831 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Sto3g2495 831 MobiDBLite consensus disorder prediction 253 269 - -
Sto3g2495 831 MobiDBLite consensus disorder prediction 246 270 - -
Sto3g2495 831 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Sto3g2495 831 PANTHER CENTAURIN/ARF 1 829 IPR045258 GO:0005096
Sto3g2495 831 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Sto3g2495 831 Coils Coil 118 138 - -
Sto3g2495 831 SMART arf_gap_3 501 646 IPR001164 GO:0005096
Sto3g2495 831 Pfam PH domain 294 427 IPR001849 -
Sto3g2495 831 ProSiteProfiles Ankyrin repeat region circular profile. 771 803 - -
Sto3g2495 831 Coils Coil 227 247 - -
Sto3g2495 831 CDD ArfGap 504 633 - -
Sto3g2495 831 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 829 - -
Sto3g2495 831 Gene3D Arf GTPase activating protein 479 646 IPR038508 -
Sto3g2495 831 Pfam Putative GTPase activating protein for Arf 504 639 IPR001164 GO:0005096
Sto3g2495 831 Gene3D - 647 827 IPR036770 -
Sto3g2495 831 CDD BAR_SFC_plant 14 215 IPR035670 -
Sto3g2495 831 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Sto3g2495 831 SUPERFAMILY PH domain-like 207 427 - -
Sto3g2495 831 SMART PH_update 293 430 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2495 Sto-Chr3 28965109 28974883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2495 511 639 C2H2 Transcription Factor Family AT4G21160 41.538 9.44e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2495 K12489 - gmx:100789134 1424.07