Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2123 ATGGCTTCACGGTTTGACAGTATCAGGGGTATCCATGCATTGAGCTCCGAATGGACGATTAAAGTTCGTGTTCTCCGTATTTGGAAGGCTCCTCCTTATCCGAAGAATTCACCTCATCCGTCTTTGGAGATGGTTCTATGTGATCGTGAGGGGTCAAAGATTGGTGAACACGTGAAGAGTCTATTTGCTGTCAAATTAATGAATGTGCTGAAAGAAGGCTCGGTGTATGTAATGTCGCAATTCAATGTCGGATCTAATTCTGGTGGTTTCCGTGCTGCAAAGCATGGCTTTAAGTTGAACTTCCAATTCCAAACACGCATAGCCGAAACTGATGATGACGAGGCAATTGAACGTTATGGCTTTGAATTTCTACCTGCATCAAGAATTTTTGCACCAGATTTTGATCATGACATCTTAGTTGATGTAATTGGACGGCTGATCCATATGGGTGATATTCAACAAGCTTCTTCTGATCCTAAGACTAAACATGTCAACATTCAACTTGAGGATCAAATGAAAGCAAAACTCAACATTATACTTTGGGGTGCTTTCATTGACCAAATTGTTGAGTATTCTCACAGTCATTCTAATGGTGTCGTAGTCATTGTAATCCAATATTGCAAAATTAAAGAATACGGTGGGCATAAGACACTCTCGAACTCAATCTTTGCATCACGAATGTTTGTTAACGCAGATATTTCTGAGATAAATGAGTTTATAAGTGGATTACATCCTGAAGAGTTATCAAGCCCTATTAATCAAAGTCTCATTAACTCTGCTGTTCCTCCAAGTCCTCTTGAAGCTGCATTTTTTGATTGGTCTAAGTTTGAGCCTGATGGATCAAGCTTTTACTGCAGGAAATGCGATTGTCTGGTTCATGCTTCAACATGCAGGTATAAGGTTGAGCTTCTCATCTTAGATGACTCATCAACTACTAATGTTATAGTGTTTGATAAGGATGTTGAGGCTTTTCTGGGAATTTCTGCTATTGACCTTAGGAAGGAACATTTACAGAACGTGGACGATATTCGTCAATTGCCGGAAAGGTTTGATAAATTCCTCGGACAAATGTTTGTCCTCAAGGTATCTGTCAAAACGTACAATTGGAACAATTCTTATTCGTTCACTGTACAGAAAATGACTTTCGATCATGATTTGATTGAAAAGTTCAAAAGAATGGCAGCGGAAAAGGATGCCAAGAAGAATGGTGAGGACAGTTTGCAATCGATTGATCTAGCTGCTGTTGATGCTGCTCTGTCAACACCTGTGCCGCAGAATTCTGCTACTCACAGTGTATTGGATGCGCGCAGGCTTTCTTTTGCTAACAATGATACTGGTCCATCTTGCTCTAATAGTCTCAATGGAAAGCGCCCAAATGATAATGGTGCGTCTGACCAGTTTCATCCTGATGATAGCACCATTGGATAA 1428 0.4027 MASRFDSIRGIHALSSEWTIKVRVLRIWKAPPYPKNSPHPSLEMVLCDREGSKIGEHVKSLFAVKLMNVLKEGSVYVMSQFNVGSNSGGFRAAKHGFKLNFQFQTRIAETDDDEAIERYGFEFLPASRIFAPDFDHDILVDVIGRLIHMGDIQQASSDPKTKHVNIQLEDQMKAKLNIILWGAFIDQIVEYSHSHSNGVVVIVIQYCKIKEYGGHKTLSNSIFASRMFVNADISEINEFISGLHPEELSSPINQSLINSAVPPSPLEAAFFDWSKFEPDGSSFYCRKCDCLVHASTCRYKVELLILDDSSTTNVIVFDKDVEAFLGISAIDLRKEHLQNVDDIRQLPERFDKFLGQMFVLKVSVKTYNWNNSYSFTVQKMTFDHDLIEKFKRMAAEKDAKKNGEDSLQSIDLAAVDAALSTPVPQNSATHSVLDARRLSFANNDTGPSCSNSLNGKRPNDNGASDQFHPDDSTIG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2123 475 PANTHER REPLICATION FACTOR A 1, RFA1 280 403 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto3g2123 475 PANTHER REPLICATION FACTOR A 1, RFA1 38 240 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto3g2123 475 Gene3D - 115 247 IPR012340 -
Sto3g2123 475 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Sto3g2123 475 CDD RPA1_DBD_A_like 19 107 - -
Sto3g2123 475 MobiDBLite consensus disorder prediction 443 475 - -
Sto3g2123 475 Gene3D - 273 397 IPR012340 -
Sto3g2123 475 SUPERFAMILY Nucleic acid-binding proteins 279 382 IPR012340 -
Sto3g2123 475 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Sto3g2123 475 Pfam Replication factor-A C terminal domain 281 380 IPR013955 -
Sto3g2123 475 PANTHER BNAC07G49340D PROTEIN 280 403 - -
Sto3g2123 475 PANTHER BNAC07G49340D PROTEIN 38 240 - -
Sto3g2123 475 CDD RPA1_DBD_B_like 141 241 - -
Sto3g2123 475 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Sto3g2123 475 Gene3D - 6 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2123 Sto-Chr3 18112921 18115372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2123 4 430 Core DNA Replication Machinery Family AT5G45400 21.811 2.58e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2123 - - soe:110778367 194.512