Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2106 ATGGTTACTCCCAACTCGCAAAGTGGCGAGAGCGTTCCCTGCGATTTCTGTACCAAACAGAGCGCTGTTCTTTATTGCAGAGCCGACTCTGCCAAGCTCTGCTTGTTCTGCGATAAGCTCGTTCACTCCGCAAATCTTCTCTCTCGCAAGCACTTGCGTTCTCAGATCTGCGATAACTGTTCGTCCCAACCTGTCTCTGTTCGCTGCACCACCGACAATCTCGTTCTCTGCCAAGATTGCGATTGGGACGCCCACGCTTCCTCCTCCGTCGCCGCCTCTCACCACCGCGTCGCCGTCGAGGGCTTCACCGGCTGCCCCTCGGCATCTGAGCTCGCTTCGCTCTGGGGTTTCCAGTTTGATCAGATTGGGACCAACACCCGCAACACATTTTATCAATCTTCTTCTCCCTGCTCGTCGTTCAATCTTCAGAACTGGGATGATTATCGGGATTTGTTCGATTCTTGCGTGCTCAAATCCGACGACGGCGTTTCTCTTCAAGTTCAAGACCTCATGGTTCCTAGAGAAAATATTAATGCCGTGATTTACCCTCCTCCGAGGGATTTCCAGGTGCTCTATGACGCTCCGAAGAAACAAACTCCCTGTTGTGGGAAGCAGAAGCAGGTTATACAAAAGCAGCTGCTGGAATTGCTCAAGAGAGATTCCATCGTTGCTGCTGGCGGTGGCGGTGAGGTTGAAGTTGAGGGTGGTAATTGTGGTGGTGGAAGTGCAGATCGAATAACTGTTGCTACTGAGGCGGAGAATTTGGTGCCTAATGCTCCGAATAAGAGCAGGGGCTTGAGGGAGGGGAGTGAGCAAGCGTTTGTTTTGGGAAATAGGGAGGACGACGGATTTCTAGCAACTGGTGGTGCTGCTCAGCAGCCATTGCAGCAGCATCAAGCACCTATTACTCCTTTGCTTATGAGTGTGTCGCCTTCGAGCCTACATCAGAAAGAAGGCGAGATGTTATGGCACGGTAATCCCAGTGGTCACTCTGTTCAGATATGGGATTTTCGTTCTGGACAACTTAGGGGCCAAGAAGAATCGAATGCACTAGAAGCTGATTATGCAGAAAGTGATGGAGAATTTATAACTAAAAATTTTGGTCAACTTATCAGAGAATCATCCATGTCGGAGACAAAGATGTTGCGAGATATATACGAGATGAATGTTGCTTATGATGATATGGCATCATATAACGCGGTGCAGAAGAATGCAAAATTTATGGTCTCAAGTGTTGCAGGGGTTGTTGACATGTGTGATGTGATGAATATGCAGAATATGTGTAACAAggcaacaacaacaacagcaACAGCAAGTCAGGGGCCTGCAACATCTGAAAGCAATAACCTACCAACAAGAAGACAAGGTGCTGGAGCAGGAGGAGCAGGTGTAGGTGTAGGAAAGCACAAAGGTAGCAGTAATGGCCAAGATACGCAGATTGGGGAACATCCTTTGCTTGTTGCAGGTGACAATATGGGAATGGAAAAAGCAGGAAGAAGCAAAGCTGACATCGACCTATTGGCCCAAAACAGGGGCAATGCAATGCTCCGTTACAAGGAGAAAAGGAAAACTCGAAgGTACGAGAAGCACATACGATACGAGTCTAGGAAGATGAGAGCTGATACTCGGAAACGAGTGAAAGGCCGATTTGTGAAATCCACTACTGATGCTGACGCTTCTCCTAATACTTAG 1692 0.4775 MVTPNSQSGESVPCDFCTKQSAVLYCRADSAKLCLFCDKLVHSANLLSRKHLRSQICDNCSSQPVSVRCTTDNLVLCQDCDWDAHASSSVAASHHRVAVEGFTGCPSASELASLWGFQFDQIGTNTRNTFYQSSSPCSSFNLQNWDDYRDLFDSCVLKSDDGVSLQVQDLMVPRENINAVIYPPPRDFQVLYDAPKKQTPCCGKQKQVIQKQLLELLKRDSIVAAGGGGEVEVEGGNCGGGSADRITVATEAENLVPNAPNKSRGLREGSEQAFVLGNREDDGFLATGGAAQQPLQQHQAPITPLLMSVSPSSLHQKEGEMLWHGNPSGHSVQIWDFRSGQLRGQEESNALEADYAESDGEFITKNFGQLIRESSMSETKMLRDIYEMNVAYDDMASYNAVQKNAKFMVSSVAGVVDMCDVMNMQNMCNKATTTTATASQGPATSESNNLPTRRQGAGAGGAGVGVGKHKGSSNGQDTQIGEHPLLVAGDNMGMEKAGRSKADIDLLAQNRGNAMLRYKEKRKTRRYEKHIRYESRKMRADTRKRVKGRFVKSTTDADASPNT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2106 563 ProSiteProfiles CCT domain profile. 511 553 IPR010402 GO:0005515
Sto3g2106 563 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Sto3g2106 563 MobiDBLite consensus disorder prediction 433 454 - -
Sto3g2106 563 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 557 - -
Sto3g2106 563 Pfam CCT motif 511 553 IPR010402 GO:0005515
Sto3g2106 563 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Sto3g2106 563 MobiDBLite consensus disorder prediction 520 563 - -
Sto3g2106 563 SMART bboxneu5 57 99 IPR000315 GO:0008270
Sto3g2106 563 SMART bboxneu5 9 56 IPR000315 GO:0008270
Sto3g2106 563 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Sto3g2106 563 CDD Bbox1_BBX-like 13 56 - -
Sto3g2106 563 MobiDBLite consensus disorder prediction 433 480 - -
Sto3g2106 563 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 9 557 - -
Sto3g2106 563 MobiDBLite consensus disorder prediction 531 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2106 Sto-Chr3 17818527 17822261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2106 12 554 C2C2-CO-like Transcription Factor Family AT2G33500 34.058 4.61e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto3g2106 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2106 - - zju:107435241 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2106 3 17818527 17822261 Sto3g2106 3 17818527 17822261 ECH