Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2088 atggagaaggagaaggagaaagaTCAGAGGAAGTTGATGAATTTTGTGGACGTGAAGAATGGAGAGCTGAGATTGCCTCCTGGGTTTCGCTTCCACCCGACGGACGAAGAACTCGTCGTTCAATACTTGAAACGCAAGGTCTTCTCCTACCCTTTGCCCGCTTCTATCATCCCCGACGTCCACGTGTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATGTGGAGCAGGAGAGGTACTTCTTCAGCACCCGAGAAGCCAAATACTCCAATGGAAGCCGATCCAACAGAGCCACGCATTCGGGATACTGGAAGGCCACGGGACTCGACAAGCAGATCGTAACTTCCAGAGGGAATCACGTGGTTGGCATGAAGAAGACTCTGGTTTTCTACAGAGGCAAGCCCCCTCACGGCTCTCGAACTGATTGGATCATGCACGAATATCGCCTTCAGACTCCTCCTTCTCCTTCGGTGGCGATGCAGAATTGGGTGCTGTGTCGCATTTTCCTGAAGAGAAGAAGTGGTAAGAATAATAATGATGAACAGAGTTTGGGGTTGAGCGGTATGATGAGGGTGAAGAtgaacaataacaacaataataagtCTAGTAGGCCCATTTTCTATGACTTTTTGGCTCGGACTGAGACAAATGCTACTACTACTGATTTAAATCGTACTCCTGCATCTTCCTCATCGGCCACTAGTGGAATCACACACCTCTCATCAACTCGTGATGAATCGGAAGATCACGAACATGAAGAAGAAAGCAGTAGTTGCAATAGTACTTTGCCTTGTTTTAGAACCAAACCCTGA 810 0.458 MEKEKEKDQRKLMNFVDVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSYPLPASIIPDVHVCKSDPWDLPGDVEQERYFFSTREAKYSNGSRSNRATHSGYWKATGLDKQIVTSRGNHVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLQTPPSPSVAMQNWVLCRIFLKRRSGKNNNDEQSLGLSGMMRVKMNNNNNNKSSRPIFYDFLARTETNATTTDLNRTPASSSSATSGITHLSSTRDESEDHEHEEESSSCNSTLPCFRTKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2088 269 MobiDBLite consensus disorder prediction 241 256 - -
Sto3g2088 269 Gene3D NAC domain 34 174 IPR036093 GO:0003677|GO:0006355
Sto3g2088 269 MobiDBLite consensus disorder prediction 218 269 - -
Sto3g2088 269 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 268 - -
Sto3g2088 269 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 15 268 - -
Sto3g2088 269 MobiDBLite consensus disorder prediction 218 240 - -
Sto3g2088 269 ProSiteProfiles NAC domain profile. 25 170 IPR003441 GO:0003677|GO:0006355
Sto3g2088 269 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
Sto3g2088 269 Pfam No apical meristem (NAM) protein 26 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2088 Sto-Chr3 17527734 17528853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2088 18 260 NAC Transcription Factor Family AT5G13180 60.156 5.41e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g2088 NAM 9.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2088 - - rcu:8275014 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2088 3 17527734 17528853 Sto3g2088 3 17527734 17528853 ECH
Sto3g2088 3 17527734 17528853 Sto13g0547 13 4877174 4878598 ECH