Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2049 ATGCATTCGAGCGAGTTCGACGGCGCCGCAGCTTTCGCCGGCGGTGGATTTATGCCGTCTCAGGAAACTCAGGACCCAGACTCTTCCTTCTACTCCTCCAAGAATCGTGATGCTCAGGCATTGCTTCCTCTGACTGTCAAGCAGATAAGTGATGCATTCCAGTCAAGCGATGATAAGTCTAATGTGATTATTGATGGTGTGGACGTTAATAATGTTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGAAAGGATTACTGATGTTGCTTTTGTTCTTGACGATGGGACTGGAAGGATTGAGTGTAATAAATGGCTTCAGGAAGCTGTAGACAGCATTGAAGTGGAGGGTATCTCGGATGGAATGTATGTGCGTTTACATGGACACTTGAAAGGCTTTCAAGGCAAAATGACTGTAAATGTATTTTCTTTAAGGCCTTTGAATGACTTTAATGAGATTGCAAGCCACTTCCTTGAATGCATATGTGTTCATCTGTATAATACCATGTTACAGTTCTCTGGTCAACACAACAATGGTCAGAAGACTCTTGAAGATATGGTCTTAGAGATCTTGCATCTTCCCACAAACAGGACAAGGGATGAGGGAGTCCCTCGTGAACTTATTGCACGACAACTTGGAATTCCTTTGGATAAGCTAATGTTAGCTATTAAAAATCTTATAGAGGAAGGAGCTATCTTTGAAGCTATAGGTGATCATTACAAGTCAATTATCGGTTGA 735 0.4231 MHSSEFDGAAAFAGGGFMPSQETQDPDSSFYSSKNRDAQALLPLTVKQISDAFQSSDDKSNVIIDGVDVNNVTLVGRVCNKAERITDVAFVLDDGTGRIECNKWLQEAVDSIEVEGISDGMYVRLHGHLKGFQGKMTVNVFSLRPLNDFNEIASHFLECICVHLYNTMLQFSGQHNNGQKTLEDMVLEILHLPTNRTRDEGVPRELIARQLGIPLDKLMLAIKNLIEEGAIFEAIGDHYKSIIG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2049 244 CDD RPA2_DBD_D 71 164 - -
Sto3g2049 244 PIRSF RPA32 167 243 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto3g2049 244 PIRSF RPA32 1 179 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto3g2049 244 Pfam OB-fold nucleic acid binding domain 72 145 IPR004365 GO:0003676
Sto3g2049 244 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 170 241 - -
Sto3g2049 244 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 170 - -
Sto3g2049 244 SUPERFAMILY "Winged helix" DNA-binding domain 180 240 IPR036390 -
Sto3g2049 244 Gene3D - 174 242 IPR036388 -
Sto3g2049 244 Gene3D - 33 168 IPR012340 -
Sto3g2049 244 PANTHER REPLICATION PROTEIN A-RELATED 2 170 IPR040260 -
Sto3g2049 244 PANTHER REPLICATION PROTEIN A-RELATED 170 241 IPR040260 -
Sto3g2049 244 Pfam Replication protein A C terminal 168 237 IPR014892 -
Sto3g2049 244 SUPERFAMILY Nucleic acid-binding proteins 41 166 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2049 Sto-Chr3 17034991 17038645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2049 3 242 Core DNA Replication Machinery Family AT2G24490 43.478 1.62e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2049 K10739 - gmx:100782819 333.183