Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2016 ATGGATTGGGACTGGAAAGAGATTGCGTGGGATCAGTATGGGTCGGAGCTATCAAAAAACGCTGCTTCGGTGGATTTGAGGCTTGGAGACACTTTTGATTCGGCGGAGAAATCATTGGCTCATAATAAACCCCATTCGAGAGAGTCGAAATCAGAAGTTTCAACTTATGGGTCGTCGAAGCGGAGCCGTACACAGCAGAATGTATCGTTCTCGGTGGATGGATGCGACTCTGACCTGAGTGACTGCAAAGAGTATCATTGGCGGCACAGAGTGTGTGAGAAGCACTCCAAAACTCCGATTGTGTTGGTTGGGGGAAAGCAGCAGCGTTTCTGCCAACAATGCAAATTGGAGTTTGATGAGGTGAAGAGGAGTTGCTAG 378 0.4841 MDWDWKEIAWDQYGSELSKNAASVDLRLGDTFDSAEKSLAHNKPHSRESKSEVSTYGSSKRSRTQQNVSFSVDGCDSDLSDCKEYHWRHRVCEKHSKTPIVLVGGKQQRFCQQCKLEFDEVKRSC 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2016 125 MobiDBLite consensus disorder prediction 37 72 - -
Sto3g2016 125 ProSiteProfiles Zinc finger SBP-type profile. 67 125 IPR004333 GO:0003677
Sto3g2016 125 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 14 125 - -
Sto3g2016 125 Pfam SBP domain 72 125 IPR004333 GO:0003677
Sto3g2016 125 MobiDBLite consensus disorder prediction 51 72 - -
Sto3g2016 125 Gene3D - 60 125 IPR036893 GO:0003677|GO:0005634
Sto3g2016 125 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 125 IPR044817 GO:0003677
Sto3g2016 125 SUPERFAMILY SBT domain 71 125 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2016 Sto-Chr3 16683952 16684400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2016 14 125 SBP-box Gene Family AT5G50670 43.939 1.59e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto3g2016 SBP 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2016 - - lja:Lj1g3v3847150.2 156.762