Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1916 ATGGAGTGGAATATTATCAaagcagcttcttcttcttcttcatgggATTTGGGTGGATTGGATCAAGCAGCAATAATTGATGAAGGGTCAAGCAGTAGTAGTAAAGGGGGATTTTGTGTGGATTTGAAGCTGGGTCATAATGGAGTCTCCAAAGTATTAGCaacatcttcttcttcaccttCAGGTTCATCCAAGAGAGCTCGAGGAATGAACAGTAATAATAATGGAAGCCACAGCACAAACGTGGCTTCATGCCTTGTGGATGGGTGCAATTCAGATCTTGGTAAGTGTAGGGACTACCATCGCCGGCACAAGggaTCCTCTGTTGTTCAGGTTCATGCTGTTCAGGTTCATGTTGGAAATGAACTTGGACAGCAGAGGATTCAgGAATTTGATGAAGGGAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAATCGACGGAGGAGAAAACCGCAGGCAGAAGGTTTGGTGAGATCTGGTAGCTTTTTGTCCAATTATCAAGGCACCCAGATGTTACCCTTCTCAAGCTCACATGCATATCCTTCCACTGCTATGGTGACTCCTACTACACTTTGGAATGCAGAAGCTAGGAGCCACCATAACCAAGAAGTGCATCATAATTTGGTTGATCATAAGAATGACCTTTTTCTTGGTTCTTCATCAACCTCCAACTTTAAAGAAGGCAGTAAGCAGCAGCTAGCATTCTTGCAAGGCCATCATCACAATTCCACCACAATTCCACAACCGccaccaccgccaccgccaccgGTATCTGTAAGTCTCGGAACCATCGCGTTGTCATCGTCTCCGCTTCTCGATCACGACCATGACTCTCGTTGTGCTCTCTCTCTTCTGTCATCTCCAAACACGACGCGCACAAGTGGGAATGTTTTGAACCCACACCAGcataaccaccaccaccaccaccgtcaTCACCAGATGTCGTCCCTTATGGACCAACCCTTAGGCCTTAGCCTGCATGATCGTAATTTGGAGCCCATGGACCCAGTCTTGGTTCCTACTAGCGGAAGCTACCATTGTCCTCCCATGTATAACAACACCAATGAAGCCCCTCATCACCCATTTCCTTTCCATTGGGAACAgtga 1110 0.4189 MEWNIIKAASSSSSWDLGGLDQAAIIDEGSSSSSKGGFCVDLKLGHNGVSKVLATSSSSPSGSSKRARGMNSNNNGSHSTNVASCLVDGCNSDLGKCRDYHRRHKGSSVVQVHAVQVHVGNELGQQRIQEFDEGKRSCRKRLDGHNRRRRKPQAEGLVRSGSFLSNYQGTQMLPFSSSHAYPSTAMVTPTTLWNAEARSHHNQEVHHNLVDHKNDLFLGSSSTSNFKEGSKQQLAFLQGHHHNSTTIPQPPPPPPPPVSVSLGTIALSSSPLLDHDHDSRCALSLLSSPNTTRTSGNVLNPHQHNHHHHHRHHQMSSLMDQPLGLSLHDRNLEPMDPVLVPTSGSYHCPPMYNNTNEAPHHPFPFHWEQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1916 369 Gene3D - 75 139 IPR036893 GO:0003677|GO:0005634
Sto3g1916 369 MobiDBLite consensus disorder prediction 53 77 - -
Sto3g1916 369 Pfam SBP domain 85 151 IPR004333 GO:0003677
Sto3g1916 369 ProSiteProfiles Zinc finger SBP-type profile. 82 152 IPR004333 GO:0003677
Sto3g1916 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 368 IPR044817 GO:0003677
Sto3g1916 369 MobiDBLite consensus disorder prediction 246 260 - -
Sto3g1916 369 MobiDBLite consensus disorder prediction 242 263 - -
Sto3g1916 369 MobiDBLite consensus disorder prediction 287 317 - -
Sto3g1916 369 MobiDBLite consensus disorder prediction 287 301 - -
Sto3g1916 369 SUPERFAMILY SBT domain 83 156 IPR036893 GO:0003677|GO:0005634
Sto3g1916 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 30 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1916 Sto-Chr3 15492642 15497608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1916 1 190 SBP-box Gene Family AT5G50670 39.013 2.11e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto3g1916 SBP 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1916 - - cam:101507938 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1916 3 15492642 15497608 Sto3g1916 3 15492642 15497608 ECH